| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1805 |
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| Symbol | |
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| ID | 5612715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2174053 |
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| End bp | 2176230 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932680 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001473544 |
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| Protein GI | 157374944 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAAA TCAATCGACA ACATATACAG ATATCTCTGG TACTAGGCTG CTTGGGTCTA
TTGACGAACC TATACCCTAT CCCTCTCTTC GGTAATGTTC AGCTTATCTT AGGGAATATT
GTCATCGTTA TTTCGGCAAT TCTGCTGGGG CCTTGGTTCG CCCTGCTCAC GGCCGTACTT
TGCGCAACCG GTCTTTTTAT CGCTTGGGGT AGCTGGCATG TATTCATATT ATTCGGTCTG
GAAGCCATCT GGCTGGGCTA CGCCCGCAGA AAAGACATTT ATGCTCTTTA TGCCGACATT
GGTTATTGGC TGGTCATCGG TATGCCACTC TTTTACCTAT ATATCCTGCT GTTTTCAAAG
CAACCCGAGA GTCACATATC ATTTATTACG CTTAAACAAG GGGTAAATGG TTTAATCTAC
GCGGCACTTG GCTCACTCAT TGTCACCCTG TTTTCTTCAC TTTGGCATTT AGAAGGCAAA
GTAAAAGATC AAAAACGCAG AACCTTTAAT GCACAGCTCA CCTATAGCTT CACCTTAGTG
CTCACCATAT CTCTGCTAGC CTCGACATTA ATATTTAATC ACCAGGTAAT AGAAAAGCAG
CAAGTTAGAC TTCAACAAAG CTTACAGGAC TCTGCAGCGC ATTTAGGACT GGCCACAGAA
GTATTTATCG ATACTCATAA GAAAGCCATA GACAATGCAT CAAGATGGCT CAGCCTGTCT
CAAGCCGATT TTCATCGCTG GCAGAATAGG CTCGCTAAGC TTCACCAAAG CTATCCCGGC
TTCATCACTA TGTTAGTCAC TGACGCCGAT GCAAGGATCA TAGCGGCAAG CCCACTCTCA
CGCCTTAAAC CCGATGACGG AAAACTTGAG AATTTAAGTG TTAAAGACAG ACACTATTTT
CAGGAGGCTT TTTTCAACCA GATAACCTAT GTCTCCCCGG TTTTTTTAGG AAGAGGATTT
GGCAACGATC CCATCGTTGC GGTCAGTGCC CCAATCTATC AGAGTGAAAA TGCTGACCAG
CCCGTGGGCG TTATCGAAGG CTCATTGAAC CTGAAAAAAT TTGTGGATAT CGATAGAGTA
AGTACGCTTC ACCACCACCA GCAATCAATG ATAATCATCG ACGAGAATAG CCGGGTGATC
TATGCATCTG AGGAACTCGA GATCCCTCCA CTATCCCAAT TCACCAGGAC TGAAAGTGGC
AAGAGGTATA AGACCAATTT AGATATGCTC AACCTCCATG ATATCGAGAA CCCTAACCCT
GAGTTCGTCT ATGCCACCTA CACACTCAAC AATGGATGGC AGCTATATGT TGTTAAACCT
TTCTCACCAC TGTTGAAGAC ACTCGAGACT CAATACCTCA CCACTTTTGC AATCCTGATC
CTTTCACTTA TCATCACTAT CATACTGACC CGAGTGATCA GCCAAAGGTT AACCACCCCT
TTGAGTGTTC TGGCAAATAA GTTTGCAGAA AAGGGGTATC AAGATGCGAG CGATTATAGT
ATCGATCAGG AATCTCCCCG TGAATTTCTG ACCCTCTTTC AAAGCCTGCG TCAGAGTAAA
CAGCAACTGA TAAGTCATCA GTTAGAGCTC GAAGAGAAAG TGGCGATACG CACTTTCGAG
CTTGAGAAGG TGAATAAGAA GCTTCAATCT CTCGCCGAAA GAGATGAATT AACCGGGCTG
TATAATCGCC GCTATGCCGA AGAAAAATTC CGGGCTACAC AGGAGTTTTG TCACCGAATT
GATGAAGCCA TGGCGTTAGC GATACTCGAT ATCGACAACT TTAAAGATAT CAATGACACC
TATGGGCACC AAGGTGGTGA TGAATGCTTA CGTGTTATTG CCAGTAAGAT GAAGCGTTTT
TTCAAACGGG ATACCGATGT CATAGCCAGG TATGGCGGGG AGGAGTTTCT GCTCATCCTG
CCTCTATGCA ATGTCCTCAT GATTGAAGAG CACCTCAATG AGTTCAGGCG TACGATCCGT
CAATTACAGA TTGATAACCC GCAGGGTAAT ACCAGCATGG CCGTGACGGT CAGCATCGGC
GCAATCGTTT CCAATGCAAG TTATAGTGAT GCATTAGAAA CCTGGTTTAA GGAGGCAGAT
CTGAATCTGT ATAAGGCCAA GAACCAAGGA AGAGACCGTG TCATCGTCTC TATCCCCGAG
CCCCAACGCC CAGGGTAA
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| Protein sequence | MFKINRQHIQ ISLVLGCLGL LTNLYPIPLF GNVQLILGNI VIVISAILLG PWFALLTAVL
CATGLFIAWG SWHVFILFGL EAIWLGYARR KDIYALYADI GYWLVIGMPL FYLYILLFSK
QPESHISFIT LKQGVNGLIY AALGSLIVTL FSSLWHLEGK VKDQKRRTFN AQLTYSFTLV
LTISLLASTL IFNHQVIEKQ QVRLQQSLQD SAAHLGLATE VFIDTHKKAI DNASRWLSLS
QADFHRWQNR LAKLHQSYPG FITMLVTDAD ARIIAASPLS RLKPDDGKLE NLSVKDRHYF
QEAFFNQITY VSPVFLGRGF GNDPIVAVSA PIYQSENADQ PVGVIEGSLN LKKFVDIDRV
STLHHHQQSM IIIDENSRVI YASEELEIPP LSQFTRTESG KRYKTNLDML NLHDIENPNP
EFVYATYTLN NGWQLYVVKP FSPLLKTLET QYLTTFAILI LSLIITIILT RVISQRLTTP
LSVLANKFAE KGYQDASDYS IDQESPREFL TLFQSLRQSK QQLISHQLEL EEKVAIRTFE
LEKVNKKLQS LAERDELTGL YNRRYAEEKF RATQEFCHRI DEAMALAILD IDNFKDINDT
YGHQGGDECL RVIASKMKRF FKRDTDVIAR YGGEEFLLIL PLCNVLMIEE HLNEFRRTIR
QLQIDNPQGN TSMAVTVSIG AIVSNASYSD ALETWFKEAD LNLYKAKNQG RDRVIVSIPE
PQRPG
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