| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1800 |
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| Symbol | |
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| ID | 5612780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2169366 |
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| End bp | 2170004 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932675 |
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| Product | threonine efflux protein, putative |
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| Protein accession | YP_001473539 |
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| Protein GI | 157374939 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1280] Putative threonine efflux protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTTA GTTTACTCGT GTCTCTTGCC GTCATTCACA GCGTCGCATT GGCAAGCCCC
GGACCGGATT TTGCTCTTGT AGTCAAAATG GCCAGCCAGG AGAGAAGAGT GACCGCCGTT
GCCTCCGCTA TTGGCATTTC AATTGCTATT TTGCTGCACA CCCTGCTTAG CTTGACCGGA
GTCAGCCTGA TAATTAAAAG CTCAAATACC CTATTTATTA TCGTGCAGCT GGCAGGGGCA
AGTTATCTGG GCTGGATGGG GATAAACGCC ATAATCAGTA CTCTACAGAA CTTTAAAGTG
AGACACACCG AGTGCGAAAC CGCTCAATTA TTCCATAAAT TAACGCCATC ACAAGGGTTT
ATGCGGGGCT TATACACTAA CCTGCTTAAC CCAAAGGCCA TGGTATTCTT CATTACTCTG
TTCTCAGCCA TGATAACCCC GGAAGTGAGC TTGGCGACTA AGGTTTGCGC AGCGATAATT
TTACTTGTTT TATCATTAAT CTGGTTTGTG TTTATTGCAT TAGTATTGTC TAAGCCCTCC
ATACAAGAGA AGATCCGCAA GGCCACGCCT GTCATCAATC TGCTCACCGG GATCCTATTT
GTCAGCGTAG CCTTTATTAT TGTGTCAGGA CTGTTCTGA
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| Protein sequence | MDLSLLVSLA VIHSVALASP GPDFALVVKM ASQERRVTAV ASAIGISIAI LLHTLLSLTG
VSLIIKSSNT LFIIVQLAGA SYLGWMGINA IISTLQNFKV RHTECETAQL FHKLTPSQGF
MRGLYTNLLN PKAMVFFITL FSAMITPEVS LATKVCAAII LLVLSLIWFV FIALVLSKPS
IQEKIRKATP VINLLTGILF VSVAFIIVSG LF
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