| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1792 |
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| Symbol | |
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| ID | 5613047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2160005 |
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| End bp | 2160859 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932667 |
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| Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
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| Protein accession | YP_001473531 |
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| Protein GI | 157374931 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.446937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCTTT TACAAATGGT CTGTTTAGTG CTGCTTAGCA CGCTCTCTAC CTGTGCTCTG
TCTGCCGTTT TTACCTTTAC AGCCATTCCT GATGAAAATG AAAGTCAACT TAGAACGCGT
TTCGAAAAAG TGGCCCTGTA TTTAGAGAAA GAGCTAGGTG TAGAAGTCAA ATATGTGCCG
GTAAAGTCCT ATTCGGCAGC CGTCACCGCT TTTAGAAATA ATCAGGTACA GCTTGCCTGG
TTTGGCGGCT TATCAGGGGT TCAGGCCCGT CGTTTAGTCC CCGGCTCGTC AGCGATTGCC
CAGGGTAACG AAGACCAATT TTTTAAAAGT TATTTTATTG CTCATAAGTC TGCCGATCTA
CTTCCATCAG ATAGTTTTCC TAATTTGAAT GGGCTCACTT TCACTTTCGG TTCGAAAAGC
TCCACATCAG GACGCTTAAT GCCTCAGTTC TTTATCGAAA GAAATTTGGG CAAGAAATCT
GAAGATGTGT TTACACGTAT CGGATTTTCC GGCGATCACA GTAGAACGAT CACGCAAGTT
CAGGCTGGTG CTTATCAGGT CGGTGCAGTG AATTATAAGG TGTGGGAGAC GGCTGTTGAA
AATGGCACGG TCGATCTTGA AAAAGTGAAT GTCATTTGGC AGAGCCCAGC CTATCCGGAT
TATCAGTGGA CCGTACGAGA GGGTGTCGAT AAAAAATTCG GTGCAGGTTT TAAAGCGAAA
ATTGAAGCTG CGCTTCTTGG AATGAAAGAT CCTGATTTAT TAAAAAGCTT TCCCAGGCAT
TCTTTCGTTC CGGCTGAGAA CGCAGATTAT GAGCCTATTG AGAGTGTAGC GAAAGCTATC
GGTCTTATCG ATTAG
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| Protein sequence | MRLLQMVCLV LLSTLSTCAL SAVFTFTAIP DENESQLRTR FEKVALYLEK ELGVEVKYVP
VKSYSAAVTA FRNNQVQLAW FGGLSGVQAR RLVPGSSAIA QGNEDQFFKS YFIAHKSADL
LPSDSFPNLN GLTFTFGSKS STSGRLMPQF FIERNLGKKS EDVFTRIGFS GDHSRTITQV
QAGAYQVGAV NYKVWETAVE NGTVDLEKVN VIWQSPAYPD YQWTVREGVD KKFGAGFKAK
IEAALLGMKD PDLLKSFPRH SFVPAENADY EPIESVAKAI GLID
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