| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1764 |
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| Symbol | |
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| ID | 5612752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2119955 |
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| End bp | 2121223 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932634 |
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| Product | D-amino-acid dehydrogenase |
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| Protein accession | YP_001473503 |
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| Protein GI | 157374903 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.124563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATA CCAGTGGGCT TGGATCTCTG ACCGTGATAG GCGCGGGGAT AGTGGGACTG
TCGGCCGCAA TACAGTTACA GCGTGCAGGC TTCAATGTGA CGGTTATAGA TAAAGAGGGG
GCTGGCGCCG GGGCGTCGAA GGGCAACGCG GGACATTTTG CGACCGAGCA TACCTTCCCC
TTGGCCGATT CGACTATGCT GCTTAAACTG CCGGGTATGT TACTCGATCC GCTCGGACCT
TTTCGAATCC AGCCCCGCTA TTTTTTCAAG GCACTGCCAT GGTTTATGCG CTTCTTGCAA
AATATGTTAC CGGGCCGAAG GGCACATAAT AGTGCGGCGA TTAAGGCGCT GAACTTAGGT
GCCATCGATG CCATGAGATC ATTGACCAAG TTCTGTGGTT GTGAGCACTT GCTGACACTC
AATGGCGGCC TGTTGGTATT TGAAGGCACG CCCGTTGCGG AAGTAGAAAA AGAGTTTCGA
GCCTATGTCG ATGCTGGTGT TGAGGTACAA CTTCTTAGCG GCGACCAGGT AAGAGCCCTC
GAACCCTCTT TAAGCGAAAA TATTACCCAT GGATTCAATT TTACACATGT AGGGCATACA
GAAGATCCCT ATCGATTATG CCTGGCTCTA CAAGCCAAGT TCAAAGAGAT AGGTGGGCAG
GTTGTGACTG ATGAGTTATT ACAGATTAAA GCCGCTAAAA TTAACTCGAC AATAGCGCTG
GAGATGAGTT CGGGTGACAG CAGGCATACT GACAGACTTA TCATCGCATC CGGCGCCTGG
TCTAAGCCTT TTGCCAGGCA GTTGGGTTAC TCTGTGCCTC TAGAGACGGA GCGGGGTTAT
CATCTGATGA TGCCGCAAAA GAGTAAGCTG TCCCGTACGG TAACCTCCTA TGAGCGAAAG
TTTATCATCA CGCCTATGGC TGAGGGGACC CGTTTAGCAG GCACCGTGGA GTTTGGCGGT
TTAAAGGCCC CGCCGGTGGA TGCCCGCGCC GATTGCCTGT TCCCCCACGG TAAAGCGCTT
TTGCCTGAGC TGTTTCGTGA TGCGTCTGCG TCCGACGGTA AGCGCTGGAT GGGATTTCGC
CCCTCGTTGC CAGACAGTCT GCCGGTACTG GGCCGCAGTC AAAAACAGTC GAATGTGTTT
TTCTCATTTG GCCATCAACA TCTGGGACTC ACCTGGTCGG CAATCACTGC CGAACTGCTC
ACCCAAGAGG TGACAGGTAA GCAAACGGAT ATCGACTTGA GTCCCTATCG GATCGATAGG
TTTAGTTAG
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| Protein sequence | MNNTSGLGSL TVIGAGIVGL SAAIQLQRAG FNVTVIDKEG AGAGASKGNA GHFATEHTFP
LADSTMLLKL PGMLLDPLGP FRIQPRYFFK ALPWFMRFLQ NMLPGRRAHN SAAIKALNLG
AIDAMRSLTK FCGCEHLLTL NGGLLVFEGT PVAEVEKEFR AYVDAGVEVQ LLSGDQVRAL
EPSLSENITH GFNFTHVGHT EDPYRLCLAL QAKFKEIGGQ VVTDELLQIK AAKINSTIAL
EMSSGDSRHT DRLIIASGAW SKPFARQLGY SVPLETERGY HLMMPQKSKL SRTVTSYERK
FIITPMAEGT RLAGTVEFGG LKAPPVDARA DCLFPHGKAL LPELFRDASA SDGKRWMGFR
PSLPDSLPVL GRSQKQSNVF FSFGHQHLGL TWSAITAELL TQEVTGKQTD IDLSPYRIDR
FS
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