Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1751 |
Symbol | |
ID | 5610870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2103179 |
End bp | 2105026 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932621 |
Product | cyclic nucleotide-binding protein |
Protein accession | YP_001473490 |
Protein GI | 157374890 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0246988 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCAA GTGAACTTCA ACCCATTACC GAGTTTATCA AGGCGCAAGT GCCTTTTGAT ACACTGGACC TCGCGACACT CGAACGTTGC TGTAAAAGCC TGAGCGTAGG CTACTACAGT AAATTATCTG CGTTTGTGCC CCTCGATGAG AGTCACCCTC AGCTCTATAT CGTACGCAGC GGCGCTTTCG AGGTGAGAGA TAATGATGGC GAGTTGCTGG ACAGATTAGG CGAGGGGGAT TACTTCGGTT TTCCCTCCCT GTTATCCGGT GAAAAGGTGA GTAACCGGGT TCGGATCCTC GAAGATGGCC TGGTGTATCA CCTCGATCCC GACACTTTCG ATTACCTGCG TGTAGAGAGT CGGCAATTCG ATCGTTTCTT TAACCGCGCC TTCGCTAAAC GCCTGCGTCA TCAGACCCGT TTCAAGGCCA AAGAGCTAAC CACCACCAAT CGGGTCAGCT CATTGATGTC AGGCGACCCT CTGGTTATCG ACGTTAATGC GACGGTGAGT GATGCCGCCC GAAAAATGCG CTCGACGCGG GTCTCCTCGG TCTTAGTGAT AGATAATAAT AAGCTTAGTG GGATCTTAAC CGACAGAGAC TTGAGAAACC GAGTCTTAGC CGAAGGGTTA GAGGGAAGTC TGCCCGTTCA TCAGGCCATG ACGACAAAGC CCAAGACCCT GACATCAAAT TCGCTGGTAT TTGAAGCCAT GTTGCTGATG AGTGAGCATA GTATTCATCA TCTGCCTATC GTTGACGATG AGCGCGCCGT GGGAGTATTG ACCAGTACCG ACATCTTACG TGGCCAAAGC TCACAACCTC TGCTTTTGAT TGGTGAGATA GAGCGTCAAA ATGATCTTGA AAGTTTAATC GGTGTCAGTA AGCAGATCCC GCTCTTGTTG CAGAATCTGA TCAGTGCAGA TGCAAGGGCG GAGGAGATTG GTCGGGTACT GACCTCGGTG ACCGATGCCT TGACCCGGCG TCTCATCGTA CTGAACCAAC AGATCCTGGG AGAAGCCCCC ATGGCCTTCT GCTGGTTGGC ATTCGGTTCT CAGGGACGGC AAGATCAGGC GGCATGTTCG GATCAGGACA ATGGTTTGTT GCTCGCTCAT GAACCCGATG AAGCGGCTGC CGGCTATTTT GAAGCCTTGA CCAAGGCGGT ATGTAACGGC CTGGACAGAT GTGGTTATAT TTATTGCCCC GGCGATATCA TGGCGCAGAA TCCTAAGTGG CGCCTGACCC TATCTCAATG GCAACAGCGC TTCGGTAAGT GGGTGAATAC TCCGGAGCCT AAGGCGTTAA TGCATGCGAG TATCTTCTTC GATATGCGCT CTGTCTACGG ACCGAGCTCT CTTTTCGATA GTCTGCAGGA CAAGGTGTTA GCGGAAACGA AAGACAATGA TATCTTCCTT GCCGGAATGA CCAATAACTC ATTGCTGGAG TCGCCGCCGT TAGGGTTTTT CAAACAGTTT GTACTCGAAC GCGACGGACG AGAGGTGAAG GGGATCGATC TGAAACACAA GGGAAATGCC TTGATAAATG ATATCGCCCG GGTTTATGCG CTGTCGGCCG GCATTAAAGA GGTGAATACG GCAAAACGCA TTCGTGCGTT AATGGAGAGT AATATCATTA ATCGTAAAGA CGCACTGAAT CTCGCCGATG CCCATGAGTT TATCGCCCAT ATGCGTCTAT CCAATCAAGG TTATCAGTAC ACTCACTCGA TAGAACTGTC TAATTACCTG AAACCACAGA ATCTCTCCTC ACTGGTTCGT CATCAGTTAC GGGATGCATT TAAGGTGGTG CATGATGCTC AGGCCGGGAT AAAGCTTAAA TTTACGAGGA CCTTTTAG
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Protein sequence | MDASELQPIT EFIKAQVPFD TLDLATLERC CKSLSVGYYS KLSAFVPLDE SHPQLYIVRS GAFEVRDNDG ELLDRLGEGD YFGFPSLLSG EKVSNRVRIL EDGLVYHLDP DTFDYLRVES RQFDRFFNRA FAKRLRHQTR FKAKELTTTN RVSSLMSGDP LVIDVNATVS DAARKMRSTR VSSVLVIDNN KLSGILTDRD LRNRVLAEGL EGSLPVHQAM TTKPKTLTSN SLVFEAMLLM SEHSIHHLPI VDDERAVGVL TSTDILRGQS SQPLLLIGEI ERQNDLESLI GVSKQIPLLL QNLISADARA EEIGRVLTSV TDALTRRLIV LNQQILGEAP MAFCWLAFGS QGRQDQAACS DQDNGLLLAH EPDEAAAGYF EALTKAVCNG LDRCGYIYCP GDIMAQNPKW RLTLSQWQQR FGKWVNTPEP KALMHASIFF DMRSVYGPSS LFDSLQDKVL AETKDNDIFL AGMTNNSLLE SPPLGFFKQF VLERDGREVK GIDLKHKGNA LINDIARVYA LSAGIKEVNT AKRIRALMES NIINRKDALN LADAHEFIAH MRLSNQGYQY THSIELSNYL KPQNLSSLVR HQLRDAFKVV HDAQAGIKLK FTRTF
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