| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1749 |
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| Symbol | |
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| ID | 5610868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2101889 |
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| End bp | 2102437 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932619 |
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| Product | CDP-alcohol phosphatidyltransferase |
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| Protein accession | YP_001473488 |
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| Protein GI | 157374888 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0558] Phosphatidylglycerophosphate synthase |
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| TIGRFAM ID | [TIGR00560] CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00811057 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCCAGTT CAGTAATCAA GCAGCTTCCC AATATGTTGA CGACATTGCG CCTGATCTTG
GCTATACCTA TCTGCCTGAT GATCCTGAAT GAAGACTATG GCAGCGTGAT ATGGATTGCA
TTTATTGCCG GACTCAGTGA CGGCGTCGAT GGCTTCTTAG CCCGTAAATT AAATGCCGTC
AGTCGTTACG GTGCGATTGT CGATCCTATT TCCGATAAGG TATTGTTGGT CAGTGTGTAT
GTCTCTTTTG CGATTGTGGG CCTGCTGCCA TGGTGGGTGG CCACGGTCGT CGTGATAAGA
GATCTCTTAA TCGTCTGCGG TGCACTCCTC TATCACTGGC AGTTTGGTCG TTATGAGATA
GCCCCGAGTC TCTGGGGAAA GGCGAGTACC TTCGTGCAGA TAACCTTTGC CCTGATACTA
TTAACCGACC AGGTTTATCC GTTCCTTACC CCGCAGAGTT TTCAAGTAGG CATGTGGTCT
CTGATCGTGA TGGCCTTTAT CAGCGGAGGG CACTATTTCT ATGTATGGAG CAAAAAAGCA
TTAAATTAA
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| Protein sequence | MASSVIKQLP NMLTTLRLIL AIPICLMILN EDYGSVIWIA FIAGLSDGVD GFLARKLNAV
SRYGAIVDPI SDKVLLVSVY VSFAIVGLLP WWVATVVVIR DLLIVCGALL YHWQFGRYEI
APSLWGKAST FVQITFALIL LTDQVYPFLT PQSFQVGMWS LIVMAFISGG HYFYVWSKKA
LN
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