Gene Ssed_1747 details

Gene Information

• Locus tag: Ssed_1747
• ID: 5610150
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: +
• Start bp: 2097541
• End bp: 2100960
• Gene Length: 3420 bp
• Protein Length: 1139 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640932617
• Product: hypothetical protein
• Protein accession: YP_001473486
• Protein GI: 157374886

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.000564232
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCCTGGTT CATTTCTGTC GTTCTTATCA TGTAAGTCTA CGATTAACAG ACTCTTTCTT 
AGTGGGCTAC TCTGTTCGCT GCTTGTTACT GCACCATTTG AAGGGCGGGC GGAAAACCTG 
AGTCGTGGTC CCTATCTGCA GCTGGGCACG CAACACAGCA TGACGGTTAA GTGGCGAACC 
GATGTCTCCA GCCCATCGAA TGTGACCTAC GGTACAGAGC TGAATGACTT AAGTGGTAAT 
GCATCCGGGG CAGATGGGTT GGATCATAGT GTGCTGATTT CGGGTTTACT GCCTGATACC 
CGTTACTACT ATGCTCTGCT CGATGAAGCG GGGAGCGTCC TTGCCGGTGG CGATAGCAGC 
CATTTCTTCT ATACCTCCCC AATTATTGGT AATACAGAGC TTACCCGAGT ATGGGTTATC 
GGTGATTCCG GCACAGCGGA TAGTAATGCC CGAGCCGTTC GAGATGCCTA TCGAGCCCGG 
ACAGGTAATG AATACACAGA CCTTTGGATC ATGCTGGGTG ACAATGCCTA TTCAACCGGC 
ACCGACAGCG AGTATCAGGC CGCGGTGTTT GATCTTTATC CTGAGCTGTT GAAGCAATCT 
CCACTCTGGG CAACCTTAGG TAATCACGAT GGGGCAAGCG CCGATTCTGC CTCACAAGAT 
GGTCCCTATT ACGATATTTT TACCTTGCCA ACCAACGCTG AAGCGGGAGG CGTTCCATCG 
GGAACGGAAG CCTATTACTC TTTCGATTAT GGCCAGATCC ACTTTATCTG CCTCGAGTCT 
CACGAAACAG ACAGGGCAAG TAGCGGTGCC ATGTTGACCT GGCTGGTGAA TGACCTTGAG 
GCCACCAGTC AGCCTTGGAT CATCGCCTAC TGGCATCACC CTCCCTACAC TAAAGGCTCT 
CATAACTCGG ACTCAGAAAA TCGCTTGATA GAGATGCGAG AAAATGCGCT GCCAATCCTG 
GAGTCTTACG GCGTGGATCT TGTCCTGTCC GGTCACAGCC ACTCCTATGA GCGTTCATAC 
CTTATCGATA GTCACTATGG CAGTTCAACG ACGTTCAGTG AGGTGATGAA ACTCGATGGT 
GGCGATGGTA AGAAAACAGG AGATGGCAGT TATCAGAAAG CAATTCAGAT CCAACAGGCC 
AATAACGGCG CCGTCTATGT GGTTGCGGGA AGTTCAGGCA AGATCTCGGG TGGAGCGCTT 
AACCACCCGG CCATGTATGC TTCAATCAAT AGTCTGGGGT CGGTCGTTGT CGAGGTGATA 
GAAAATGAGC TGACGGCTAC TTTTATCGAT AATACCAATG CCGTTCAAGA TGCATTCACC 
ATCACTAAGG GACCGGATAT TCTTCCACCT GAATTGGTGT CGGTTGAGGC GATTGATACG 
ACACACATCA GGGTTAATTT TTCAGAAAAT ATCGGCTTGG CTAGTGCAAC TGATATTTTG 
AATTACCAAC TTGATAATGA CGCCGTTGCG CTCTCGGCTC AGCAGAGTAC AAATCAGCGC 
GAAGTCACTT TAACTACCTC GGCCCTGATC CCTTCACAGC TCTACACCCT GACAGTCAAT 
GACATCGAAG ATATTTCGCT TAACACAATA GTCGCCGATA CCCAGCAGAC ATTTACCTAT 
ATCAATCTAA TCACCGTCGC ATTTCAGGAT GGAGTCAGTC CTGCCGCGGG TTATGCCGGT 
ACCAGTGATG CCTATATCAG TGAGCTCAAT AGTGGCGCTA ACTATGGTAC GAGTTCGAAC 
CTCTATATCG ATGGTGATGA TGGCGGCGGA GTCGATCTTT CGAGTCTGCT TAGATGGGAT 
ATTAGTCAAA TTCCGGTTAA TGCCACTGTC GAGTCGGCGG CGATCACCTT AGATGTGTTT 
AACCCATCGG GTAGCAGCTA TGATGTTTTC GCGCTTTATT CTCCTTGGGT CGAAGCTGAA 
GTGACCTGGC AGCAGTATAG AGCCGGTATG GCTTGGGCGT CGGCTGGTGG ACAGGGCGGA 
AGCGATCGCG GCTCGATTTC CCTCTCTTCA ATTTCACCCT CGACTGGACT GTTCACGGCT 
AACCTCAATG AGGCCGGCAT TGCTATCGTT CAGTCCTGGC TGGATGGTGC CGTCAACAAT 
AATGGCTTTG TCATCGCAAA CACGTCGGCT TCAGATGGTG CCGATTTTTA TTCGAGCGAG 
TCGACGAATT TCCACCCTAA ATTAACATTG GTTTACTCCC AACCTGAGCC AGAGGGGGAT 
AGCGAAGCAC CGAGCCGGGT TGAAAACCTG CAACTCAGTT CAGTGACCAC GGGCAGTGCA 
TCTATGAGCT GGAGTGCGGC AACCGATAAT GTCGCTGTGG CCGGCTATAA GATACTGCGT 
GACGATGTGA TGATAGCTAC ATCATTGATA ACGAGTTTCG ATGATGGTGG TTTAACACCA 
GCAACAGATT ATGCCTATAA GGTGATCGCT TTCGATGGTG CCAATAACGA ATCTATTCCC 
AGCGCGCCAC TAAATGTCAC GACCAACGCC ATAGTCGCCT CGGTTCATGT CGAGCAGATA 
GCCATGGCCA TCGAGTCGGT AAACAGGAAA AAACTCAGGG CACAGGCTGA TATCTCGGTC 
GTCGATAATA TGGGCTCAGG TATTGGTAAC GTCGCGGTGC TGGGGAGTTG GACAGGCCTG 
TCGACACTGT CTGTATCTGG CGTGACATCG AGCGAGGGCA AGGTCAACTT CGGCTCGGGT 
AACGCAAACA AAAATAGCAG TGGTCAATTT ATCTTTACCG TCAACTCTCT GAGCCTCACG 
GGCTACACCT ACCTCGAGAG TGACAATATT GAGACCAGTG ACTGTATTCA ATCCGATGCC 
ACAGCCTGTG GAGGAATTAG TGCACCAACG GATCTCAGTG CCAGTTTCAA TGGCAGTCAG 
GTTGAGCTGA GCTGGTCAGG CGTGGTTCAA GCGACCAGCT ATAACGTCTA CCGTTCGCTC 
GATTCCGGCG GCTATAACTC GCCCGTTCAA TCGGACGTGA CGAATTATCT CGATATTTCG 
GTAGCGCCTG ATACCCGCTA TTACTATGTT ATATCGGCCA GCGATGGCGT CGAAGAGTCG 
CCTGTTTCAC AAGAGGTCTC TGTGACGACT ATCTCTGCGC CTACGGTATT ACAGGCCGAT 
GATGTCTCAC TCTCTCTTAA GAGGAAGGGA CGTAGCTACG ATATTACGGC TCAGGTATCC 
GTGATAGATG ATTTGGGAAG CCTAGCTGCG GGCGCCAAGG TGAGCGGTAA CTGGACCTTA 
GCCGACAGTA CGACGTCGAT GGTATCAGGG ACTACCGGGG CAAACGGTTC CCTAAGTTTG 
AAGCTGTCTA AGGTGGCGGC TCAAAGCGGC GACGTTTTCG CTTTTACCGT CACAAATATT 
GAGCGAGAAG GCGATAGCTT CAACGATGTC ATGACCTCGG GTTCGGTAAC GGTGCCTTAG 

 

Protein sequence

MPGSFLSFLS CKSTINRLFL SGLLCSLLVT APFEGRAENL SRGPYLQLGT QHSMTVKWRT 
DVSSPSNVTY GTELNDLSGN ASGADGLDHS VLISGLLPDT RYYYALLDEA GSVLAGGDSS 
HFFYTSPIIG NTELTRVWVI GDSGTADSNA RAVRDAYRAR TGNEYTDLWI MLGDNAYSTG 
TDSEYQAAVF DLYPELLKQS PLWATLGNHD GASADSASQD GPYYDIFTLP TNAEAGGVPS 
GTEAYYSFDY GQIHFICLES HETDRASSGA MLTWLVNDLE ATSQPWIIAY WHHPPYTKGS 
HNSDSENRLI EMRENALPIL ESYGVDLVLS GHSHSYERSY LIDSHYGSST TFSEVMKLDG 
GDGKKTGDGS YQKAIQIQQA NNGAVYVVAG SSGKISGGAL NHPAMYASIN SLGSVVVEVI 
ENELTATFID NTNAVQDAFT ITKGPDILPP ELVSVEAIDT THIRVNFSEN IGLASATDIL 
NYQLDNDAVA LSAQQSTNQR EVTLTTSALI PSQLYTLTVN DIEDISLNTI VADTQQTFTY 
INLITVAFQD GVSPAAGYAG TSDAYISELN SGANYGTSSN LYIDGDDGGG VDLSSLLRWD 
ISQIPVNATV ESAAITLDVF NPSGSSYDVF ALYSPWVEAE VTWQQYRAGM AWASAGGQGG 
SDRGSISLSS ISPSTGLFTA NLNEAGIAIV QSWLDGAVNN NGFVIANTSA SDGADFYSSE 
STNFHPKLTL VYSQPEPEGD SEAPSRVENL QLSSVTTGSA SMSWSAATDN VAVAGYKILR 
DDVMIATSLI TSFDDGGLTP ATDYAYKVIA FDGANNESIP SAPLNVTTNA IVASVHVEQI 
AMAIESVNRK KLRAQADISV VDNMGSGIGN VAVLGSWTGL STLSVSGVTS SEGKVNFGSG 
NANKNSSGQF IFTVNSLSLT GYTYLESDNI ETSDCIQSDA TACGGISAPT DLSASFNGSQ 
VELSWSGVVQ ATSYNVYRSL DSGGYNSPVQ SDVTNYLDIS VAPDTRYYYV ISASDGVEES 
PVSQEVSVTT ISAPTVLQAD DVSLSLKRKG RSYDITAQVS VIDDLGSLAA GAKVSGNWTL 
ADSTTSMVSG TTGANGSLSL KLSKVAAQSG DVFAFTVTNI EREGDSFNDV MTSGSVTVP