| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1746 |
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| Symbol | |
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| ID | 5610149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2095609 |
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| End bp | 2097327 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932616 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_001473485 |
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| Protein GI | 157374885 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000905196 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGTAC AAACATTAAC TTATTTAATC GTGGGCGTGA CGTTTGCCCT ATATATTGGT
ATTGCGATCT GGAGTAGAGC TGGATCGACC AAAGAATTTT ATGTGGCAGG TGGTGGTGTT
CATCCTGTGA TGAACGGAAT GGCGACTGCG GCAGATTGGA TGTCGGCGGC GTCATTTATT
TCACTGGCGG GTATCGTCTC GTTTGTTGGT TATGATGGTT CAGTTTACCT GATGGGTTGG
ACTGGTGGTT ACGTACTGCT TGCACTGTGT ATGGCACCGT ACCTGCGTAA ATTTGGTAAG
TTTACCGTGC CCGACTTTAT CGGTGACCGT TACTACTCCC AGGCAGCGCG TACCGTAGCC
GTTATTTGTG CCATCTTCAT CTGCTTTACC TACATCGCGG GTCAGATGCG TGGTGTTGGG
GTGGTGTTCT CAAGGTTCCT CGAGGTTGAT GTCGAAACCG GTGTTTACAT AGGTATGGCC
GTGGTCTTCT TCTATGCTGT TTTGGGTGGA ATGAAAGGCA TTACATACAC GCAAGTGGCT
CAATACTGTG TACTAATCTT CGCTTTCATG GTTCCTGCAA TATTTATCTC TGTCATGATG
ACGGGTCACA TCTTGCCACA AGTTGGCTTC GGTGCTGAGC TTATTGACGC TGCGGGTAAC
GGTACAGGAG TGTATCTGCT CGACAAGTTA GATGGCCTAT CGACCGAGCT TGGATTTGCT
CAATATACCG AAGGCTCTAA GAGCATGATT GACGTGTTCT TTATCACTGG TGCCTTGATG
TTCGGTACTG CTGGTCTGCC ACACGTTATT GTACGCTTCT TCACCGTGCC TAGGGTAAAA
GATGCACGTA TATCGGCGGG TTGGGCACTG GTATTCATCG CTATCATGTA CACCACGATT
CCTGCATTGG CGGCGTTCTC TCGTGTAAAT ATGATTGAGA CGATTAATGG TCCCGAATCA
ACAGGTGTTG CGTATGAAAC TGCACCTGAG TGGATTAAGA ACTGGGAAAA GACGGGCCTG
ATTAAGTGGG ATGATAAGAA TGCCGATGGC AAGATCTATT ATGCCAAAGG CGCTGAAAGT
GAGATGAAGA TTGACCGCGA TATCATGGTA TTAGCAACGC CTGAAATTGC TAACTTACCG
GCTTGGGTTA TCGCATTAGT CGCAGCAGGT GGTTTAGCGG CGGCACTATC AACCTCTGCG
GGTCTGTTGC TGGTTATCTC AACTTCGGTC TCTCACGACC TGTTGAAGAA GAACTTAATG
CCCGATATTT CAGATAAGAA AGAGCTGATG TTCGCACGTA TCGCAGCAGC CTTAGGCATT
GTGATGGCGG GTTACTTCGG TATTAATCCA CCGGGCTTCG TTGCGGCGGT CGTTGCGATT
GCATTCGGAT TAGCGGCATC GTCACTCTTC CCGGCAATCA TCATGGGTAT CTTCTCTAAG
ACGATGAACA AAGAGGGCGC TATTGCTGGC ATGGTGATTG GTCTACTATT CACCGCCTCA
TATATCGTGT TCTTCAAGTT CATGAATCCT GAGATGAATA ACGCCGACAA CTGGTTCATG
GGGATCTCTC CCGAAGGCAT CGGTATGATG GGTATGGTGG TTAACTTTGG TGTCGCCTTT
GCGGTAAGCA AGGTAACGGC TGCGGTACCT CAGGATGTTG TTGATATGGT TGAGTCGATT
CGTTTCCCTA AAGGGTCAGG CGAGGCGCAC GATCATTAA
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| Protein sequence | MDVQTLTYLI VGVTFALYIG IAIWSRAGST KEFYVAGGGV HPVMNGMATA ADWMSAASFI
SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFIGDR YYSQAARTVA
VICAIFICFT YIAGQMRGVG VVFSRFLEVD VETGVYIGMA VVFFYAVLGG MKGITYTQVA
QYCVLIFAFM VPAIFISVMM TGHILPQVGF GAELIDAAGN GTGVYLLDKL DGLSTELGFA
QYTEGSKSMI DVFFITGALM FGTAGLPHVI VRFFTVPRVK DARISAGWAL VFIAIMYTTI
PALAAFSRVN MIETINGPES TGVAYETAPE WIKNWEKTGL IKWDDKNADG KIYYAKGAES
EMKIDRDIMV LATPEIANLP AWVIALVAAG GLAAALSTSA GLLLVISTSV SHDLLKKNLM
PDISDKKELM FARIAAALGI VMAGYFGINP PGFVAAVVAI AFGLAASSLF PAIIMGIFSK
TMNKEGAIAG MVIGLLFTAS YIVFFKFMNP EMNNADNWFM GISPEGIGMM GMVVNFGVAF
AVSKVTAAVP QDVVDMVESI RFPKGSGEAH DH
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