| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1741 |
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| Symbol | |
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| ID | 5609744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2092221 |
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| End bp | 2093081 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932611 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001473480 |
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| Protein GI | 157374880 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00103969 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000172083 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAAGATTA AAACGGTCAG TATTGTGGGT TGTGGATGGT TTGGATTACC GCTGGCAAAG
GCATTAGTTA AACAGGGTTA TATCGTTAGC GGTAGCAAGC GCTCAATGGA AGGGGCTGCT
GCGTTAACTC ATGATGGTAT TTCAGGCTTT GGCCTCGATC TCGATAAGCA GCAATTCAAT
GGGAATGTGG TTGGAGAGTC TGAGCTTGGA TTCGATGAAT CGACGTTAGC TATGCTGCGT
CAAAGGCTTC GTACCGATGC CATCATCATC AATATTCCCC CTGCAATTGT AAAATCTCCC
GGTGCTTACC AGCAACGTTT GAGTTTCCTC AAACGCTTGA TGGCTCAGCA TGAATATATG
AGGATCATCT TTGTCAGCAC CACGGGGGTC TATCCTTCGT CAGTACATCC AGTGACAGAA
AGCGATGCCG CGCCGCATTC GGCATCGAGC GAGGTATTGC TCGCAGCTGA GAAGCTGTTC
AGCGAGCTAC CTAATGCCTG TATTATCCGG TTTGCCGGTT TAGTCGGACC AGAAAGGCAT
CCGGGACGCT TCCTGGCGGG AAAACAAAAT TTACCGGGCC GAGAGTCACC GGTTAATCTG
GTGCATTTGG ACGACTGCAT CGGCGCCGTG TCCTGTCTAT TATCGGCTGG TTCTCTATCT
CCCGTTTATA ATATCTGTGC GAGGCAACAT CCGGGCCGGG AAAGCTTCTA TTCGGCGGCG
GCTAAAGACA TATCTCTCAC CGCGCCGGCA TTCAGCGATG AGTCGCAAGT CGGTAAATGC
ATCGACGGCA CTAAAATTTC TACAGAATTA GGCTTTCAAT ATCGCTATAA CGACCCTTTA
GCTATGCTCT GTGAATGTTG A
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| Protein sequence | MKIKTVSIVG CGWFGLPLAK ALVKQGYIVS GSKRSMEGAA ALTHDGISGF GLDLDKQQFN
GNVVGESELG FDESTLAMLR QRLRTDAIII NIPPAIVKSP GAYQQRLSFL KRLMAQHEYM
RIIFVSTTGV YPSSVHPVTE SDAAPHSASS EVLLAAEKLF SELPNACIIR FAGLVGPERH
PGRFLAGKQN LPGRESPVNL VHLDDCIGAV SCLLSAGSLS PVYNICARQH PGRESFYSAA
AKDISLTAPA FSDESQVGKC IDGTKISTEL GFQYRYNDPL AMLCEC
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