Gene Ssed_1721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1721 
Symbol 
ID5610187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2066659 
End bp2067627 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content48% 
IMG OID640932591 
Productcysteine synthase A 
Protein accessionYP_001473460 
Protein GI157374860 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0031] Cysteine synthase 
TIGRFAM ID[TIGR01136] cysteine synthases
[TIGR01139] cysteine synthase A 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000132763 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCAACA TTTTCGAAGA TAATTCTTAT ACCATTGGTA ACACCCCTCT TGTTCGTCTA 
AAGCGCGTTA GTAAAGGTAA TGTTTTAGCC AAAGTAGAAG CCAGAAATCC AAGTTTTAGC
GTCAAGTGCC GTATCGGTGC CAATATGATT TGGGATGCTG AGAAAAAAGG CCTGCTTACT
TCAGACAGAG AGATAATTGA GCCAACATCG GGTAATACCG GTATCGCTCT GGCTTATGTC
GCTGCAGCCC GTGGTTACAA GCTAACACTC ACCATGCCAA ATACCATGAG CCTCGAGCGT
CGTAAGCTTC TAAAAGCACT CGGCGCCAAT TTAGTGCTGA CCGAAGGTGC TAAGGGGATG
AAAGGCGCTA TCGATAAGGC GGAAGAGATC CGTCAATCGG CACCAGAGAA GTATCTGCTT
CTACAGCAGT TCGATAATCC GGCTAACCCC GAGATCCATG AGAAAACCAC TGGGCCAGAG
ATTTGGAACG ATACCGACGG TGAAGTGGAT GTGGTTGTCG CAGGCGTTGG TACCGGTGGT
ACTATCACAG GCGTTAGTCG TTACATAAAA AATACCCAAG GAAAGGCCAT CACTTCGGTT
GCCGTTGAGC CAGCAGACTC GCCAGTTATC CAGCAGACAT TGTCTGGCCA AGCACTTCAA
CCCGGTCCTC ACAAGATCCA GGGAATTGGT GCAGGATTTA TCCCGGGTAA CCTGGATCTC
GAGATGATTG ATCGCGTAGA AGCCGTTACG AACGAAGAGT CTATCGAGAT GGCTCAACGT
ATCATGAAAG AGGAAGGTAT TCTGGTTGGT ATCTCATCGG GTGCGGCCGT TGTAGCGGCA
AATAGAATTG CTGAGCTACC TGAGTTTGAA GGAAAGAACA TCGTTGTTAT TCTTCCTTCA
GCTGCTGAGC GTTACCTCTC TTCAGTGCTT TTCCAGGGTG AGTTCAGCGA CGCTGAGAAT
ATCCAGTAG
 
Protein sequence
MSNIFEDNSY TIGNTPLVRL KRVSKGNVLA KVEARNPSFS VKCRIGANMI WDAEKKGLLT 
SDREIIEPTS GNTGIALAYV AAARGYKLTL TMPNTMSLER RKLLKALGAN LVLTEGAKGM
KGAIDKAEEI RQSAPEKYLL LQQFDNPANP EIHEKTTGPE IWNDTDGEVD VVVAGVGTGG
TITGVSRYIK NTQGKAITSV AVEPADSPVI QQTLSGQALQ PGPHKIQGIG AGFIPGNLDL
EMIDRVEAVT NEESIEMAQR IMKEEGILVG ISSGAAVVAA NRIAELPEFE GKNIVVILPS
AAERYLSSVL FQGEFSDAEN IQ