| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1720 |
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| Symbol | |
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| ID | 5610186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2065598 |
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| End bp | 2066263 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932590 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001473459 |
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| Protein GI | 157374859 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3226] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000768968 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACACACC CATTGACCTA TGTTGGACGG CAGACGAGCC GTAGTGATGG TGAAGCCAGA
AGGCTAGTCA TACTCGAAGC GACGTTAAGG TTGATAGTTA GAGATGGGAT CCGCGGTGTT
CGGCATCGTG CCGTAGCCAA GGAGGCCGAT GTGCCACTGG CGTCGACGAC TTACTACTTT
AAAGACATTA AAGATCTGAT CAGTGATTCG TTAACCTATT TTGCTGAAAA AACATTATGG
ATGAATGAGG AGCTTGAAAA TCGCAGCTTT GAGTTACTCA AAGAGCTCGA TGGACTGGCC
AAAAAGGACA AAAATAGCGA TTTATTGATA GACAATTTAG CTCAATTTAT CAGTGAACAT
ATTCGTGAAC AGATCTGCCA TCGCGATAAA CGTATCTTAG AGTTGGCGTT CCACGAGGAG
GCCCTGAGAA ATGCGCAATT GGCCGATGCG ATTAAACGCT TAGATGACTC TTTCCTGTCG
ACGATTGAGC GATTTTTTGA ATTGCTGGGG TCGAAAACCT CAATGGCCGA TGCCCATCAG
TTATTGGCCT TGATCAAATA CCTGGAATAT AAATATGTTC TGATAGAGGG GGCTGATGAA
GATGATCAGC AGTTAGAGCA TATCGTGACC TCTACAGTGC ACAATATTAT TAATGCTATA
GAATAG
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| Protein sequence | MTHPLTYVGR QTSRSDGEAR RLVILEATLR LIVRDGIRGV RHRAVAKEAD VPLASTTYYF
KDIKDLISDS LTYFAEKTLW MNEELENRSF ELLKELDGLA KKDKNSDLLI DNLAQFISEH
IREQICHRDK RILELAFHEE ALRNAQLADA IKRLDDSFLS TIERFFELLG SKTSMADAHQ
LLALIKYLEY KYVLIEGADE DDQQLEHIVT STVHNIINAI E
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