Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1716 |
Symbol | |
ID | 5611592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2059048 |
End bp | 2061729 |
Gene Length | 2682 bp |
Protein Length | 893 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932586 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_001473455 |
Protein GI | 157374855 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.716976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000145025 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGCCTA ATTCTAAATT GGCTAAAGCT GTACGTTTTG CATTAATTAC TGGGGCAGCA ACTGCCGCAT TAAGTGCACC AGCAGTCTAT GCCGCAAGTG ATGATGAATC AGTAGAACGT ATTCAAGTTA CAGGTTCTCG TATTAAGCGT ACCGATATGG AAACAGCGAC GCCTGTTACC GTAATGAGCG CTGATGATAT GGCGAAGCAA GGCTTCACCA ATATTCAAGA TGCACTAGAG AGTCTAACCT CTACTACAAG TGCGATGACA ACCCAGTCAG TTCATGGTTT CACACCTGCA GCATCATCTA TCAGTCTACG TGGCGCTGGC GCTAACCGCA CACTAACACT TATCGATGGT AAGCGTTTAA ACCAGTACCC TAAGCCTGCA GGCGGTACTG ATAACTTCGT CGATACAGCA AACCTTCCAA TGGAAGCCGT TCAGCGTATC GAGATCCTTC AATCAGGTGG TTCTGCAATT TATGGTGCCG ATGCTGTCGG TGGTGTAATT AACATCATCC TAAAGAAAGA TTTCGAAGGT GTTGCACTTA AATATCGCCA TGGTGATACA TTTGAAGGTG GCGGAGGAAG TGATCGTGTT GCACTATCTC TAGGTTCATC ATCTGATCGT GGTAACGTTT CAACTTTCAT CGAATTTACA ACTAACGAAC AGTTAAAAGC AACTGATCGT GAAAACTTCG GCCTTCATAC CGATAAAGTT CCTTACAGCG AATACTCACA GTACAGTTCA TACGGTGCAC GTATCGCAGG TGGCAGTGGT GCTAAAGCTC TGACTCCTGA AGAGTGTACT GCAGGCGGTT GGTTCTGGGA TGCAGCTCGC AGCATCTGTG GTTTCGATCG TTCACAGTGG CGTGACCTTG AGCCTGAAAG CACACGTTTC ATCAGCTCAA CAAATTTCAA CTATGAGCTT GCCGATGACG TGACCTTTGT TGGTCGTCTT GATTTTGCAG AAGCAAAATC GACTACCCGC ATCGAGCCTA TGGCAATCAA CGACTATGAC ATCAATGTCG CCGGTGACAA CGTTACCGTT AGTGCAGGTG ATCTCAGCAA GACATTCAAC AATAAAGCAA CCGCGCTAGG TGGTGACTTT GCCAATGCTG AAGATGGCGA TTACTACTAC GTCCGCCGTC TACATGAGTT TGGCAACCGT ATGGGTGAAA CAAAAACCCG TAACTACTTC TTCACAGCCG GTCTTCAAGG TGTTGTATTT GATGAATATG ATTGGGACGC CTCAGTTAAC TATGGCCGTA CTAACGTCGA CGTTTTCCGT GGTGGATACG CGACTATAGC TGGTATGTTT GACTACATCA CAGATGGTGA AAATGGCAAC TCACTGCTTA AGAACATGAA TGCTGAAGAT GTAGAGGCTG CTTCTTACAC ACCTTTCGAG CGAGCTCAGT CAACTCAGAA AAACGTACAG GCAAACATCA CAGGTACTGC ATTTGAAATG CCTGAAGGGG ACGCACTGTT CTCATTTGGT GCAGAATACA CAGAGCAAGA TTACGAAACT GAGTCAGATT CTGAATCTGC CAAAGGTAAC ATCTTGACTA CCGGTGGTTC TTCAGGTGCA GGTGATCGCT CTTACTGGGC AAGTTACGCA GAACTAAGCA TTCCAGTACT TGACGTGCTG ACTATCGATG CGGCAGTTCG TTATGATAAC TACAGTGATT TTGGTGGTAA TTTATCACCT CAAATCGCTA TTGAATATCG TCCAATGGAT GAGCTACTTG TTCGTGGTTC TATCAGTTCT GTATTCCGTG CACCAGATAT GCACCGTGTG TATGGCGATT CGACCAATGG TTTCACTACA GTAATTGACT TCAAGCAGTG TCTGGCCATG GGCGGCACAC CTGCTCAAAC TCATCCAGAT CCAAGGATCA ACGAGATATG TAATGAACTA CATATCGACA CGACTACTGG TGCTAACAAA GAACTTGAAG CAGAAACTGG TTACACTGCA AACATAGGTG CGGTATGGGG CGGTGATTCA CTCAATGCTT CATTCGACCT TTGGGAGTGG AAGCTTGACG ATATGGTTAG CGATATTAGC GCCAGCAAAG CAGCACGTGA ATATGAACAA TATGAAGACA TGATCACTCG TGATGATGAT GGCACCATTA CTCATGTTGA CGCGGTTGCA CAAAACCTTG CATTCCAAAA AGTTCGTGGT ATCGACATGA CTGCCGGTTA CGCTTGGGAT CTTAACGAGT TTGGTGAGCT AAAACTGAAC TTCAATGGTA CCTACATTCT ATTGTCTGAA GGCCAACTAG CGCCAACGGA TCCTGTAGAA GATGATATCG ATAATGGCGG TCTACCTCAG TACCGTGCGA ACTTAGTCCT TGGTTACTTC ATCGAAGACT TCGAAACAAC ACTTGGCGCG TACCATACAG CTCGCATGCA CGGTATGCAG TACAAGTCAT TCAAAGAGTC TGCGGGTGAT GACTTTGACG AAAGTGCACA TGAAGTTGCT TCACAGACTA AGTGGAACCT GACTGCTGGT TATAGCATCA CTGATGATAT AAAAGTAAAA GCTGGTGTTG TTAACCTGTT TGACGCTGGT CCAAACTTTG ATCCAACTGC AACTAGCTGG CCTCACTACC AGCGTTCAGT ATATAACGCA CGTGGTCGTG AGTGGTTCTT AGAAGGTGAA GTTAAGTTCT AA
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Protein sequence | MLPNSKLAKA VRFALITGAA TAALSAPAVY AASDDESVER IQVTGSRIKR TDMETATPVT VMSADDMAKQ GFTNIQDALE SLTSTTSAMT TQSVHGFTPA ASSISLRGAG ANRTLTLIDG KRLNQYPKPA GGTDNFVDTA NLPMEAVQRI EILQSGGSAI YGADAVGGVI NIILKKDFEG VALKYRHGDT FEGGGGSDRV ALSLGSSSDR GNVSTFIEFT TNEQLKATDR ENFGLHTDKV PYSEYSQYSS YGARIAGGSG AKALTPEECT AGGWFWDAAR SICGFDRSQW RDLEPESTRF ISSTNFNYEL ADDVTFVGRL DFAEAKSTTR IEPMAINDYD INVAGDNVTV SAGDLSKTFN NKATALGGDF ANAEDGDYYY VRRLHEFGNR MGETKTRNYF FTAGLQGVVF DEYDWDASVN YGRTNVDVFR GGYATIAGMF DYITDGENGN SLLKNMNAED VEAASYTPFE RAQSTQKNVQ ANITGTAFEM PEGDALFSFG AEYTEQDYET ESDSESAKGN ILTTGGSSGA GDRSYWASYA ELSIPVLDVL TIDAAVRYDN YSDFGGNLSP QIAIEYRPMD ELLVRGSISS VFRAPDMHRV YGDSTNGFTT VIDFKQCLAM GGTPAQTHPD PRINEICNEL HIDTTTGANK ELEAETGYTA NIGAVWGGDS LNASFDLWEW KLDDMVSDIS ASKAAREYEQ YEDMITRDDD GTITHVDAVA QNLAFQKVRG IDMTAGYAWD LNEFGELKLN FNGTYILLSE GQLAPTDPVE DDIDNGGLPQ YRANLVLGYF IEDFETTLGA YHTARMHGMQ YKSFKESAGD DFDESAHEVA SQTKWNLTAG YSITDDIKVK AGVVNLFDAG PNFDPTATSW PHYQRSVYNA RGREWFLEGE VKF
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