| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1712 |
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| Symbol | |
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| ID | 5611901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2053749 |
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| End bp | 2054660 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932582 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473451 |
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| Protein GI | 157374851 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00125801 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGTATT CACTCAAGCA AATCAGCGTT TTTGATGCCG TAGCTAGCCT AGAGAGCGTT
AGTGCTGCTG CAAGAAAACT TTCAATGACA CAGTCTGCTG TGAGTATGTC TCTGGGGCAG
CTGGAAAATT TGCTCGGTCG ACCACTTTTT ATCCGCCAGG GAAACCGACT GACATTGAGC
CACTGGGGAA ACTGGCTGCG CCCTAAGGCG AGGCGTTTGC TTCAGGATGC ACAACAAATC
GAATTAGGCC TTCACGAACA ACACCTTATA AGCGGTCGAT TCCGATTATG TTCGAGTCAA
ACGGCAGCAG AGCACCTTTT ACCCGAGCTC ATCAGTAGAA TTGATACGGA TTTCCCGGAA
CTTCGAATAG ATTTAACGGT AGAAAATACC GAAAATGTCG TCGAAGGCCT GTTAAATTAT
GAATTCGATC TAGGGATCAT CGAGGGCCGT AATGATGACA GCCGTCTGCA TCAGGAGCAG
TGGGTAGATG ATCATCTCGT CATTATCGCA TCGCCTCACC ACCCTTATGC CAATTATGAA
AGCACGAGTC TGTCTCAACT AGAACAGGCA AAATGGGTAT TACGCGAACA AGGCGCCGGT
ACACGACGAA TATTTGAGGG CGCCATTCAT GGTGTCATCG AAAAGCTCAA TGTATGGAAG
GAGTATGAGC ATGTACCTCT ATTGAAGTCT CTGGTTAAAA ACGGATTATA TCTGAGCAGC
CTCCCCTTCC TCGATGTAGA AAAAGATGTG GCGAACGGCG AGTTAGTTAT TCTTTCGACG
CCTCAATTAA ATATGCAGCG TCACCTCTCC TTCGTCTGGC GCAATGATTC AGGCGAGAAT
CCTCTACGTG ATTGCCTTAT TACCGAGGCG CGTCGCTTGA GCCGTAGTCG ACAAATCAGA
AATCAGGGGT AA
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| Protein sequence | MKYSLKQISV FDAVASLESV SAAARKLSMT QSAVSMSLGQ LENLLGRPLF IRQGNRLTLS
HWGNWLRPKA RRLLQDAQQI ELGLHEQHLI SGRFRLCSSQ TAAEHLLPEL ISRIDTDFPE
LRIDLTVENT ENVVEGLLNY EFDLGIIEGR NDDSRLHQEQ WVDDHLVIIA SPHHPYANYE
STSLSQLEQA KWVLREQGAG TRRIFEGAIH GVIEKLNVWK EYEHVPLLKS LVKNGLYLSS
LPFLDVEKDV ANGELVILST PQLNMQRHLS FVWRNDSGEN PLRDCLITEA RRLSRSRQIR
NQG
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