| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1710 |
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| Symbol | |
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| ID | 5613714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2051994 |
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| End bp | 2053469 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932580 |
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| Product | formate/nitrite transporter |
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| Protein accession | YP_001473449 |
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| Protein GI | 157374849 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2116] Formate/nitrite family of transporters
[COG3448] CBS-domain-containing membrane protein |
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| TIGRFAM ID | [TIGR00790] formate/nitrite transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.402769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00135887 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGTCTC AACAGAAAGT AAGCGCGATC CCTCTTGTTA CACCAAATGG TGTCGAGAGC
AAGAAGCCAA TGCTATCTCT CTACCAACAG GCAGAGACTT ACGGCCAGTC AAAAGTGGTC
AAGGCGGTCT GGCAGTCGTT TGGACTTGCA GCTTTTGCGG GTGCTTTTAT CGCTTTAGCC
TTTGTTTTTT ATATCACAGT GACTACTGGC AGCAGCACCA GTCCTTGGGG AATGGTCCGT
CTGGTAGGTG GTTTGGCGTT TAGTCTGGGC TTAATGCTTG TGGTGATCTG TGGTGGTGAG
CTGTTTACCA GCACCGTACT AAGTAGTGTT GCCTGGGCGC AGAAGCAAGT GTCTACCCGA
GAGTTGCTTA AATGTTGGCT GAGAGTCTAT CTGGGGAACC TCTTGGGCGC CTTGTTGATG
CTGACACTCA TCATGGCAGC ACGTATGTAT GAACTCGATG GAGGCCGTTG GGGCTTGAAT
GCGTTGAACA TAGCGCAACA TAAATTACAC CACGGATGGT TCCAGGCTTT TGTGCTGGGA
GTGCTTTGTA ACATGTTGGT TTGTCTTGGA GTTTGGATGA CATTTGCCAG TCGTGATGCT
CTGACGAAAG CCATACTCCT CATGTTACCC GTGGCGATGT TTGTCAGCAG TGGTTTCGAA
CATAGTATTG CCAACTTGTT TATGGTGCCG CTTGGGATCT CGATTCAACA TTTAGCATCC
CCTGAGTTCT TCACTTCCTT AGGGGTTACG GCTGCACAAT ATTCTGATTT AACGCTCGAA
CATTTTATTT TTAACAATCT TATTCCCGTG ACATTAGGAA ACATTGTCGG GGGAGGGGCG
TTTGTCGGGT TAGGTTATTG GTTGATTGAA CATGCCGCTA AACCTGAGCA ACAGCCTCTT
GCTAAATGCT TTACACAACT TACTAGCCCT ACACATCTAT ATTCCGTTTC TAGTTCTGGA
GAACAGCCAA AAATGCCAAA AACAATTCAA AAACTACGTG TACAAGATCT GATGGATCCT
AAACCTATGA CGATCTCACC TGAGCTATCT GTTTATGCGG GTTTAAAGCA GCTTACAGAT
GAAAATAGTC GCAATGCGGC GGTATTAGAC GACAAGCAGC GCCTGCTTGG GTTTGTGTCG
CAGCAGGATC TGCTTCGCCG TCTATGGTCT GAAGAGTTTG CCAGAGGCGT GTCTGATAAG
GTTAGTGACC TGATGCAGAC GGAAGTGTTA ACGGTATCGC CTCAGGATTC GGTATCAGAG
TTAATTGAGT TGATGGTGGT CGACCGCAGT AAACTTTTCC CTGTTAATGA CAGCGGTATT
TTAATGGGTA GTACCTACAA GAGTTATGAA GAGCGCCTGC GTTTTGCCTC TGCGAGCAAG
CCAAGTGTGT TCCCGGTAGT AGACAAGGGG GTGCTTTGCG GTGTTATTAC ACGTGAAGCG
ATTGCACAGA AGGTGTGTGA TATCTATAAG ATGTAA
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| Protein sequence | MTSQQKVSAI PLVTPNGVES KKPMLSLYQQ AETYGQSKVV KAVWQSFGLA AFAGAFIALA
FVFYITVTTG SSTSPWGMVR LVGGLAFSLG LMLVVICGGE LFTSTVLSSV AWAQKQVSTR
ELLKCWLRVY LGNLLGALLM LTLIMAARMY ELDGGRWGLN ALNIAQHKLH HGWFQAFVLG
VLCNMLVCLG VWMTFASRDA LTKAILLMLP VAMFVSSGFE HSIANLFMVP LGISIQHLAS
PEFFTSLGVT AAQYSDLTLE HFIFNNLIPV TLGNIVGGGA FVGLGYWLIE HAAKPEQQPL
AKCFTQLTSP THLYSVSSSG EQPKMPKTIQ KLRVQDLMDP KPMTISPELS VYAGLKQLTD
ENSRNAAVLD DKQRLLGFVS QQDLLRRLWS EEFARGVSDK VSDLMQTEVL TVSPQDSVSE
LIELMVVDRS KLFPVNDSGI LMGSTYKSYE ERLRFASASK PSVFPVVDKG VLCGVITREA
IAQKVCDIYK M
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