| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1698 |
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| Symbol | |
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| ID | 5609874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2034160 |
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| End bp | 2036631 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932568 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473437 |
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| Protein GI | 157374837 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.405062 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGATAA GCTTAGCCTG GAGGTTATTT AAGCGGGAAC TACTGCAAGG ACAGCTACTA
TTAATCGTTT TAGCCATCAC ATTAGCCGTG TTATCCGTAA CCGGCTTAGC CAGAGTCAGC
GAAAGGTTAC AGATTGCCAT TAATGGGCAG GCCTCAAAGT TTATCGCTGC GGACAGGATC
ATTAACTCTC CGGTTGAGAT TGATGAGTCA TTTATCGCAA AAGCAGAGGA GTTGGGGCTA
GCACATGTAT CGAGCATGCA GTTTAACTCC ATGGTGTTTG CAGAGGATAA GTTTCAGCTC
GTAACAGTAA GGGCCGTGGG AGAGGGGTAT CCGCTCAAAG GCAAAATTGA GCTTAATTCT
GATTCAGTGA CTCACTCAGG CGATCAGACT GGTCTACCCG GTTCCGGTCA GTTGTGGTTT
GAAACCCGTC TGGGCGGATT ACTGGCTTAT CCCGAATCAC TGGAGCTGGG CAATAAGCAG
TTTACGCTCA GTGAGGAGAT ATCCCGCTTA CCCGACGCAG GTTTTAACCC GTTTGCCTCG
TCACCGGTCG TGCTTATCAG GCTGGAAGAC GTTGTAGCTA CCGGGGTTAT ACAGCCTGGA
AGCAGGGTGA CATATTTGGC TCAATTTTCT GGCGATGCGT CTCAATTAAA GCAGTTTGAG
TCTTATATCA AGCCAAAATT GACCTCCAGT CAACGTTGGG TCGATGTACA ATCCGGTGAA
TCTCCCATCG CCGATGCGGT GAAACGCGCC GAGCGATTTT TGCTATTGGC AAGTTTGTTA
GGTATAGCAT TGGCTTGTGC CGCCATTGGT ATTGCGGCAC AGCGCTATTG TCATCGCCAC
TATGATGTCG TGGCCATGTT GAAAACCTTT GGAGCATCGG CCAGACAGAT CCGCGTTTTG
TTCGGTACGC ACCTGCTGTT AGTTACCCTG TTTGGCGTAA TTCTGGGCCT GATGGGGGGA
TTTGCACTGG ATGCCCTTAT TACCTCCTTC CTCCCCGAAG AGATAGCGGC TTACTCACCG
CCCTATATTC GTCCTATATT GTTAGGACTG GCGACAGGTT TTATCAGTGC GTTTATGTTT
TCAGCTTACC CACTGATGCG CCTGCTCTCT ATCCCTCCAT TACGGGTATT GCAACGACAA
CTTGAGGGGT TACAGCTGGG AATGTGGTTG CACTTGCTTC TTAGCCTTGG TGCTATGGCT
CTGTTAGGCT ATCTTTACTC CAAAAGCCTT CCATTGACCC TGACTGTGGT TGCAGGAGTG
CTCTTGCTGG GCGTGTTACT CAGTATTTTG GGTTTCCTGA TGATCCGTAT GGGTCACAGT
ATCGGGATGA AAACGACTAA TCCGCTGCAA TTGGCACTAG CCGGGCTTCG CCGCCGTGCT
AAACAAAATG CGGTTCAACT CGTCGGCTTC AGTAGTGCAC TCGTCTTGCT GTTGACTATT
CTGGCTTTAA GACAGGATCT ACTCAGTGAA TGGCAAAATC AGTTACCCGA GAATGCACCT
AATTACTTCT TAGTAAATAT CTCTCCCGAT GAAGAGGCAG CGTTGGGAGA TTATCTGAAA
GCCAATACGG TTAAGACTAC GGATATCTAT CCCGTCGTCA GGGGACGCTT AACCGAGATC
AATGGTGAGA AACTGATCTC GGCTGAACAG GAAAAAGCCG GCGCCAAAGG GAGGTTAGGG
ATCTCTCGTG AATTAAACCT AACCTGGCGA GACTCCTTGC CACCCAATAA TGAGATCCTC
GAGGGTGAGT TCAATCTAAA TGAGAGCGAT GTTTCGGTTG AGTCAGGTGT TGCCGAACGC
TTAGGTATCA AGATTGGCGA TAGTTTGACT TACGTTATCG ATAACCAAAG GTTAGTCGTG
AATGTGGGGA GTTTGCGAGC GGTTCATTGG GAGACACTGC AGCCCAATTT TTTCATGATT
TTTACTCATG CTTCCCTGGC GTCATTTTCT CATACCTCGA TGGCAAGCTT TCATCTGGAA
GAGAATAAAC AGGGGATAAT ACTGGATATT ATTAAGCAGT TCCCCACGGT CTCTATTATC
GATGTCGGTA CTATGATTAA ACAGCTCAGG CAGATCGTAG ATCAGGTTTC TTTGTCACTG
ACGCTGGTAT TAGTGCTAGT GGTACTGGCC AGTAGTTTGG TCATGATAGC CCAAACTGAG
GCAGGAATGG CCACCAGGCA GAGGGAGCTT GCCGTGCTGA GAACCTTTGG CGCATCGGGT
TGGCTACTGA GAATGGCCAC GGGGCTGGAG TTTGCGTTAC TGGGAACCGT TGCTGGTTTT
CTGGCGGTGA TCGTTGCCGA GTTTACACTC TACCTGCTTA AGACTCAGGT GTTTGAGTTG
AATGTCTATA TGCATTGGCC TTGGTGGGGA ATAGCGCCTG TGTGTGGCGC ATTGACCGTT
GCCTTATTAG GCGTCTGGCG TTGCAGGCAA CTGCTTAGCA AATCCTGTGC AGATTTGCTA
AAAGCCGTGT AA
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| Protein sequence | MEISLAWRLF KRELLQGQLL LIVLAITLAV LSVTGLARVS ERLQIAINGQ ASKFIAADRI
INSPVEIDES FIAKAEELGL AHVSSMQFNS MVFAEDKFQL VTVRAVGEGY PLKGKIELNS
DSVTHSGDQT GLPGSGQLWF ETRLGGLLAY PESLELGNKQ FTLSEEISRL PDAGFNPFAS
SPVVLIRLED VVATGVIQPG SRVTYLAQFS GDASQLKQFE SYIKPKLTSS QRWVDVQSGE
SPIADAVKRA ERFLLLASLL GIALACAAIG IAAQRYCHRH YDVVAMLKTF GASARQIRVL
FGTHLLLVTL FGVILGLMGG FALDALITSF LPEEIAAYSP PYIRPILLGL ATGFISAFMF
SAYPLMRLLS IPPLRVLQRQ LEGLQLGMWL HLLLSLGAMA LLGYLYSKSL PLTLTVVAGV
LLLGVLLSIL GFLMIRMGHS IGMKTTNPLQ LALAGLRRRA KQNAVQLVGF SSALVLLLTI
LALRQDLLSE WQNQLPENAP NYFLVNISPD EEAALGDYLK ANTVKTTDIY PVVRGRLTEI
NGEKLISAEQ EKAGAKGRLG ISRELNLTWR DSLPPNNEIL EGEFNLNESD VSVESGVAER
LGIKIGDSLT YVIDNQRLVV NVGSLRAVHW ETLQPNFFMI FTHASLASFS HTSMASFHLE
ENKQGIILDI IKQFPTVSII DVGTMIKQLR QIVDQVSLSL TLVLVLVVLA SSLVMIAQTE
AGMATRQREL AVLRTFGASG WLLRMATGLE FALLGTVAGF LAVIVAEFTL YLLKTQVFEL
NVYMHWPWWG IAPVCGALTV ALLGVWRCRQ LLSKSCADLL KAV
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