| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1697 |
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| Symbol | |
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| ID | 5609873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2033408 |
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| End bp | 2034160 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932567 |
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| Product | ABC transporter related |
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| Protein accession | YP_001473436 |
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| Protein GI | 157374836 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.558012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.191667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGAAG TCAGTGCTAT CACAGTAAAC AATCTCGTTA AGTCAGTGGC TACCCAAGAG
GGAGAACTTA CTATCCTCAA CGGCATTAAT ATGGATGTCA AGCAGGGGCA AAGTATTGCG
ATACTCGGGC CATCAGGTTC GGGCAAGTCG ACCTTGCTTG GATTACTCGC CGCCCTGGAC
TCTCCGACCA GTGGAGAGAT CATACTCGAC GGTGTTGCTT TACAGTCTTT GGATGAGGAG
AAGAAGGCGG CTTTAAGAAA GCAGAAGGTC AGCTTTATTT TTCAGTCTTT CATGTTGGTC
GATACTCTCA ATGCGTTGGA AAACGTGATG CTTCCTGCTG AGCTTGCAGG TATCCATCAG
GCAAAAGAGA AAGCCGAGGC CATGTTAGAA AGAGTCGGAT TAAGCCATCG ACTCACACAT
TTCCCTAATC AACTGTCGGG TGGTGAACAG CAAAGAGTCG CCATTGCCAG AGCCTTTATA
TGCGAGCCTA AGGTATTATT TGCCGATGAG CCGACCGGAA ATTTAGATGC GGTAAATAGT
GAAAAGGTCG CTGACATGCT GTTCGAGCTA AACAGAGAGA GTGAGACAAC TTTAGTGTTA
GTCACCCATG ATCTGATATT AGCCAAGCGA TGCCAGCGTC AGCTGTTAAT GGATACCGGC
GTGATAACCG AATCTGAAGG TGAGCCTAAT AAGGACAAGA CTTTATCGAA CAATCCGGCA
CAGAGTCATC TGGCCAGTGT GGAGGCGAGC TAA
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| Protein sequence | MSEVSAITVN NLVKSVATQE GELTILNGIN MDVKQGQSIA ILGPSGSGKS TLLGLLAALD
SPTSGEIILD GVALQSLDEE KKAALRKQKV SFIFQSFMLV DTLNALENVM LPAELAGIHQ
AKEKAEAMLE RVGLSHRLTH FPNQLSGGEQ QRVAIARAFI CEPKVLFADE PTGNLDAVNS
EKVADMLFEL NRESETTLVL VTHDLILAKR CQRQLLMDTG VITESEGEPN KDKTLSNNPA
QSHLASVEAS
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