| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1691 |
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| Symbol | |
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| ID | 5610015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2025436 |
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| End bp | 2026302 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932561 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001473430 |
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| Protein GI | 157374830 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.58425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG
GAGGCATGGA TTGCTGCAGG CCGAATTAGT ATAGATGGTG AAATAGCCAG CCTTGGTGAC
AGAATTGAAG CCGATGCGAA AATTCGTATT GATGGCCGTG CTATCTCAAT TAAGTCCGAA
GAGGATATCG TTTGCCGAGT GATTGCTTAT CATAAACCGG AAGGTGAGAT CTGTAGTCGT
AAAGACCCTG AAGGTCGTCC AACGGTTTTC GATCGCCTGC CTAAAACCCG TGATTCACGT
TGGGTTGCAG TGGGTCGATT GGATATCAAT ACTTCTGGAT TATTGCTGTT TACCTCAGAC
GGTGAGTTGG CTAACCGTTT GATGCACCCA TCGAATGAAG TTGAGCGTGA ATATGCTGTG
CGTACGTTCG GTGACGTGAG CGATGCCTGT ATTCAGCATT TGCGTACCGG CGTTACCCTT
GAAGATGGCC CTGCAAACTT TGATAAAGTC AAAGCTGCCG GCGGTGAGGG GATGAACAAG
TGGTGGCACG TGACGCTTTC TGAAGGACGT AATCGCGAAG TTCGTCGTCT ATGGGAATCT
CAGGAAGTAC AAGTCAGTCG TCTTATCCGT ATCCGCTATG GCAGTATCGA GTTGCCAAAA
TCACTGCCTC GTGGTGGTTG GATTGAGTTG GAGCTTGAAC AGGTCAACTA CCTAAGAAAA
ACGGCTGGAC TAGATATCGA AAACCGCACT ATGTTAGGCA CAGATAAGCA CAGTGTTGCT
CGCTCTAAAG TGAAGAGTGC TAAGATTAAA CGTGCAGTAC ATAAGCATAA AGCAACTGGG
GGCAAGAACA CTCGTCAACG CACTTAA
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| Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRIS IDGEIASLGD RIEADAKIRI DGRAISIKSE
EDIVCRVIAY HKPEGEICSR KDPEGRPTVF DRLPKTRDSR WVAVGRLDIN TSGLLLFTSD
GELANRLMHP SNEVEREYAV RTFGDVSDAC IQHLRTGVTL EDGPANFDKV KAAGGEGMNK
WWHVTLSEGR NREVRRLWES QEVQVSRLIR IRYGSIELPK SLPRGGWIEL ELEQVNYLRK
TAGLDIENRT MLGTDKHSVA RSKVKSAKIK RAVHKHKATG GKNTRQRT
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