| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1690 |
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| Symbol | |
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| ID | 5610014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2024799 |
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| End bp | 2025443 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932560 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001473429 |
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| Protein GI | 157374829 |
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| COG category | [K] Transcription |
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| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
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| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.706761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAGTCAGA AGAAACAGCT GCAGATAAAT CCTGATCAGC TTAAACAACT TATTGAGGCG
AGCCTATTTG TTATGGGTAA ATCGGTCTCG ATTAAAAGTT TGAAAGAGAC GGTTTTAGTC
AACTTTAATG TATCAAGAGC TAAGATTAAA TTGGCCATTG AAGAGTTGCA GCAAGACTAC
CAAGGTAGAG GAATTGAGTT GATGAGCGTC GCGGGGGGAT ATCGATTTCA GTCGATTGAG
TCCCTGAGTC CTTTTCTTCA ACCATTATGG CAGGAAAAAG CGCCTAAATA CTCGCGTGCC
ACATTGGAAA CCTTGGCAGT GATAGCCTAT CGTCAACCGG TGACACGTGG CGATATAGAG
TTTGTTCGTG GTGTGGCGGT GAGTAGTCAT ACCATAAAAA GTTTAGCCGA TAGGCAATGG
ATAAGAATGG TGGGACATAA AGAGGTGCCG GGAAGGCCCG CTCTTTATGC GACTACGACA
GAATTTTTAG CCTACTTTGG CTTAGATACC ATAGCGGATT TACCCCCGCT GACGGATACT
GAGTCATTAG CGGCCCTATT TTCTGATGTG AATTCTCTTG AGAAACCACA AGAAGAGATT
GGGCCTGAAA ATACACAAAA CATAGAAGAG TCTACTAATG AGTGA
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| Protein sequence | MSQKKQLQIN PDQLKQLIEA SLFVMGKSVS IKSLKETVLV NFNVSRAKIK LAIEELQQDY
QGRGIELMSV AGGYRFQSIE SLSPFLQPLW QEKAPKYSRA TLETLAVIAY RQPVTRGDIE
FVRGVAVSSH TIKSLADRQW IRMVGHKEVP GRPALYATTT EFLAYFGLDT IADLPPLTDT
ESLAALFSDV NSLEKPQEEI GPENTQNIEE STNE
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