| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1688 |
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| Symbol | |
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| ID | 5610072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2023278 |
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| End bp | 2023898 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932558 |
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| Product | SUA5/YciO/YrdC/YwlC family protein |
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| Protein accession | YP_001473427 |
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| Protein GI | 157374827 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0009] Putative translation factor (SUA5) |
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| TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTCAGT TTTTTTACGT ACATGAAGAG AACCCGCAGG CACGTTTAAT CAATCAAGCG
GTGAATGCCA TTAAGAATGG TGGAGTCATT GTTTATCCTA CGGACTCTGG CTATGCGCTG
GGTTGTTTAC TGGGTGAGAA GGATGCGATG GCCAGAATTG CGCGCATTCG TCAGATTGAT
AATGATCATA ATTTTTCTTT GATGTGCCGT GACCAGTCTG AACTGGCGAC CTATGCCAGA
GTCGATAATC AGGCCTATCG TGTGTTGAAA CATAATACCC CGGGTCCATA TACGTTTATT
TTTAAGGCGA GTAAGGAAGT GCCTAAGCGC TTGCAAAATC CCAAGAAGAA AACCATTGGG
ATCCGGGTTC CGGACAATGT TATAGCACTC GCGCTACTGG AGGCGTTAGA CGCCCCTCTG
ATGTCGACCA GTCTAATTTT GCCCGGGGAA GAGTTTACCG AATCAGATCC TGAACATATA
CGCGATATTT TAGAGCATCA AGTGGATGTG ATCATTCATG GTGGTTATTT AGGTGAGAAG
CCCACCACAG TTATCGATAT GTCCGAGGGG GATATTGAGG TGCTGCGTGA AGGGGCTGGC
GATGTGACTC CCTTTATATA A
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| Protein sequence | MSQFFYVHEE NPQARLINQA VNAIKNGGVI VYPTDSGYAL GCLLGEKDAM ARIARIRQID
NDHNFSLMCR DQSELATYAR VDNQAYRVLK HNTPGPYTFI FKASKEVPKR LQNPKKKTIG
IRVPDNVIAL ALLEALDAPL MSTSLILPGE EFTESDPEHI RDILEHQVDV IIHGGYLGEK
PTTVIDMSEG DIEVLREGAG DVTPFI
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