| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1681 |
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| Symbol | trpA |
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| ID | 5611085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2014834 |
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| End bp | 2015652 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932551 |
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| Product | tryptophan synthase subunit alpha |
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| Protein accession | YP_001473420 |
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| Protein GI | 157374820 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0159] Tryptophan synthase alpha chain |
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| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGAAT CTAAACAAGC AGGCCGTTAT CAGGCAACAT TTGCCGCACT GAAAGCTAAA
AACCAGGGCG CATTTGTCCC CTTTGTCACC TTAGGCGATC CAGGCCCTGA ACTGTCACTG
AAAATTATCG ACACCTTAGT GGAAAACGGC GCAGATGCGC TCGAACTGGG CTTCCCGTTT
TCAGACCCTT TAGCCGATGG CCCCGTCATT CAGGGCGCGA ATCTACGCGC ACTCGATGCA
GGCACCACTC CGACGCAATG CTTCGAGATG CTTAGTGCCA TTCGCGCTAA ATACCCGGAG
CTCCCCATTG GCCTGCTGTT ATACGCCAAC TTAGTGTACG CCAACGGTGT GGATACCTTT
TATGCTAAGG CCAATGCTGC TGGCGTCGAT TCGGTATTGA TTGCCGACGT GCCCGTCGAG
GAGGCCGAAC CATTTATCCT GTCGGCCAAG AAACATGACA TCGCACCTAT CTTTATCGCA
CCACCCAATG CCGACAGCGA AACCCTTAAG CTTGTCAGTG AAAAAGGGGC TGGTTACACC
TACCTCTTGT CCCGTGCAGG CGTTACCGGC ACCGAATCAA AGGCAGGCAT GCCCATCGGT
GATATTCTGA ATCGCTTAAA AGAGTTTGAT GGTGCGCCGC CACTGCTTGG TTTTGGTATT
GCCGAGCCTT CTCAGGTCAA GGCTGCCATA CAGGCTGGCG CCGCTGGGGC AATATCAGGC
TCTGCCGTAG TAAAAATCAT CGATGCAAAT AAAGCTAACG AAACGATTCT CTTAGCCAAA
CTTGGCGAGT TTACCCGTGA TATGAAAGCT GCGACATAA
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| Protein sequence | MTESKQAGRY QATFAALKAK NQGAFVPFVT LGDPGPELSL KIIDTLVENG ADALELGFPF
SDPLADGPVI QGANLRALDA GTTPTQCFEM LSAIRAKYPE LPIGLLLYAN LVYANGVDTF
YAKANAAGVD SVLIADVPVE EAEPFILSAK KHDIAPIFIA PPNADSETLK LVSEKGAGYT
YLLSRAGVTG TESKAGMPIG DILNRLKEFD GAPPLLGFGI AEPSQVKAAI QAGAAGAISG
SAVVKIIDAN KANETILLAK LGEFTRDMKA AT
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