| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1674 |
|---|
| Symbol | |
|---|
| ID | 5611816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2008015 |
|---|
| End bp | 2008425 |
|---|
| Gene Length | 411 bp |
|---|
| Protein Length | 136 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932544 |
|---|
| Product | nickel-responsive regulator |
|---|
| Protein accession | YP_001473413 |
|---|
| Protein GI | 157374813 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain |
|---|
| TIGRFAM ID | [TIGR02793] nickel-responsive transcriptional regulator NikR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.750347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACG AAACTATCCG CTTTACCGTA TCCCTGCCAG AGTCACTCTT TAAAGAGATT
GAGTTAGATC AACAAGAGCG TGGTTACCAG TCTCGTTCTG AGTACATCCG GGATCTATTC
AGGGACCGTA TTGTCGATAA ACAGTGGAAT AACAGCAAGG AAGATGTGGT TGGTGTACTC
ACATTAGTGT TCGATCACCA CCAACGCGGA CTGTCAGAAA AGCTCATAGA GATCCAGCAT
AATCACCTGG TGCATGTGCT TTGCAGTACA CATGTGCATG TGGACCATCA TAACTGTTTA
GAAACCATCA TCATCAAGGG CCAAGCATCC GAGGTCAACT TATTGGTTAA CCAAATTTCT
GCGCTTAAGG GAGTGAAAGT CGCTCGCCTA AGCCGAGCCG GGATTGTGTA A
|
|---|
| Protein sequence | MSDETIRFTV SLPESLFKEI ELDQQERGYQ SRSEYIRDLF RDRIVDKQWN NSKEDVVGVL
TLVFDHHQRG LSEKLIEIQH NHLVHVLCST HVHVDHHNCL ETIIIKGQAS EVNLLVNQIS
ALKGVKVARL SRAGIV
|
|---|
| |