| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1658 |
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| Symbol | |
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| ID | 5610190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1984830 |
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| End bp | 1986869 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932528 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001473397 |
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| Protein GI | 157374797 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0371283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCTCT ATATTGCCGA AAAACCCTCC CTTGGCCGTG CTATTGCCGA TGTACTGCCT
AAGCCCCATA AGAAAGGCGA TGGTCATATC ATGGCCGCCA ATGGGGATTG TGTCTCATGG
TGTATTGGTC ATTTGCTGGA ACAAGCCGAA CCCGACCATT ATGACCCTCT ATTTAAGTCC
TGGAAGTTCG AACACCTTCC CATCATCCCG CAGCAATGGA AGATGAAAGC TAAACCTAAG
ACACGCTCAC AACTCACCGT GCTAAGGGGC TTAGTGAAAA AGGCTTCACA GCTTGTCAAT
GCCGGTGACC CTGACCGTGA GGGGCAACTA CTGGTCGATG AAGTGATAGC TCATCTTGGC
GTCAAGGGTG AAAAACTCAA TAACACCCAG CGTCTGCTTA TCAGTGATCT GAACCCTCAG
GCGGTCAAAC GTGCATTAGG TCAGATGCGC AGTAATCGAG AGTTTATTCC CTTATCCACC
TCAGCCTTGG CCCGCTCCAG AGCGGACTGG CTCTATGGTA TGAACATGAC CCGTGCCTAC
ACGCTTCAGG GGCGCAAGGT GGGTTATCAG GGCGTGCTCT CGGTAGGTCG GGTACAGACG
CCGCTGCTTG GTTTGGTGGT CAGGCGCGAT GAAGAGATCG CGAATTTTGT CTCTAAGCCC
TTCTTTGAGG TGTTGGCGAA TCTGACAACG GATAACAAGG AGGCGTTTAA GACGAAATGG
CAGCCCAGTG CGGCATGTCA GCCTTACATG GACGAAGAGG GAAGAGTGCT GGCTAAAGGC
TTAGCGCAAA ACGTCGTCGG CCGAATTACG AATAAGCCCG CCGAAGTGAC GCAAGTGCTG
GCGAAAGATA AGAAACAGAA TGCACCGCTG CCATACAGCC TATCATCACT GCAGATCGAT
GCTGCCAAAC GCTTCGGCAT GAGCGCAAAA GAGGTCCTCG ATACCTGTCA GACTCTATAT
GAACGGCACA AATTGATCAC CTACCCTAGA TCAGACAGTC GCTACCTGCC AGTCGAACAG
TTTCAACAAG CGTCCCAGGT CGTTTCAGCG GTAAGCTCCG GCGCAGCCGA ACTGCTAGAG
GGGATGACTG CCCCCGATAC CAAGATAAAA TCCAAGGCGT GGAATGATAA GAAGGTCGAC
GCTCACCACG CGATCATTCC AACCGAGAAA ACCGCTAATC TGTCTCAATT GGGGGCCCGT
GAAAGGCAGA TCTATCTGCA GGTTGCCCGT CAATACCTGG CGCAGTTTTA TCCCCCATAC
CTCTATAGTG AAACAGAGGT TCATGTCTTG ATCGAGGGCG GGAATTTCAA GACTAAGGCG
AAGCAGGAAA GAGCACTGGG TTGGAAGCAA CTTTTCGGTC GAAATAGCGA CAAGCAAAAA
TCGAATGGCC CTGATAGTAA GAATAACAGT GATGATGATG AAGAGTCGAG TCAGGTACTA
CCGCCCTTAG TTAAAGGTCA GCAACTTCAC TCGGGCATGG GGGAGCTTGT CGAGAAACAC
ACCCAGGCCC CTAAACACTT TACCGATGCG ACTCTGCTAG GTGCGATGAC AGGGATCAGT
CGTTATGTCA CCGACCCCGA GATCCGAAAA ATTCTTAAAG ACACCGATGG CCTGGGAACC
GAAGCTACCC GAGCGGGGAT TATTGAGCTG TTATTCAAGC GAAGTTTTCT GTCGAGGCAG
GGGAAATCAA TTCTCTCAAC TGAGGTAGGC CAAGGCTTAA TCAATAGCCT GCCTATGAGT
GCGACCACGC CCGATATGAC GGCACTGTGG GAGAGTAACT TAGACGCTAT CTGTCGAAAA
GAGGCGAAGT ATTTAAGCTT CATGTCACCA TTAATCGCTT CACTGTCTGA GTTAATTACT
CAGGCAGGTT CACAGTTGCC TTCTGCATTG CAGGGGGTAA AGGCGCCGGC TAACAGTTTC
AGGAAAAAAC GCTACAGTAA GTCGCTTGGC AGTGGCCGCA AAAAGTCGAC AACGGGTTCT
ACTTCCCGTA CCTCAGCCAC AAAAAAACGG GCGAGCAGTA AAACTCAAAC TAAGGGCTAA
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| Protein sequence | MILYIAEKPS LGRAIADVLP KPHKKGDGHI MAANGDCVSW CIGHLLEQAE PDHYDPLFKS
WKFEHLPIIP QQWKMKAKPK TRSQLTVLRG LVKKASQLVN AGDPDREGQL LVDEVIAHLG
VKGEKLNNTQ RLLISDLNPQ AVKRALGQMR SNREFIPLST SALARSRADW LYGMNMTRAY
TLQGRKVGYQ GVLSVGRVQT PLLGLVVRRD EEIANFVSKP FFEVLANLTT DNKEAFKTKW
QPSAACQPYM DEEGRVLAKG LAQNVVGRIT NKPAEVTQVL AKDKKQNAPL PYSLSSLQID
AAKRFGMSAK EVLDTCQTLY ERHKLITYPR SDSRYLPVEQ FQQASQVVSA VSSGAAELLE
GMTAPDTKIK SKAWNDKKVD AHHAIIPTEK TANLSQLGAR ERQIYLQVAR QYLAQFYPPY
LYSETEVHVL IEGGNFKTKA KQERALGWKQ LFGRNSDKQK SNGPDSKNNS DDDEESSQVL
PPLVKGQQLH SGMGELVEKH TQAPKHFTDA TLLGAMTGIS RYVTDPEIRK ILKDTDGLGT
EATRAGIIEL LFKRSFLSRQ GKSILSTEVG QGLINSLPMS ATTPDMTALW ESNLDAICRK
EAKYLSFMSP LIASLSELIT QAGSQLPSAL QGVKAPANSF RKKRYSKSLG SGRKKSTTGS
TSRTSATKKR ASSKTQTKG
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