Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1654 |
Symbol | |
ID | 5610952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1981086 |
End bp | 1981706 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932524 |
Product | sporulation domain-containing protein |
Protein accession | YP_001473393 |
Protein GI | 157374793 |
COG category | [S] Function unknown |
COG ID | [COG3147] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00276459 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCTAGTC ATTTTCAGAA TCGTCTCGTT GGTATCATAG TGCTCGTAGC CTTAGGTGTC ATTTTTCTGC CCGATATTTT AGATGGTAAA AAAGAGCACC AAGTGGAGCA ATTCTCAGAG ATCCCACTCA GGCCTGAGGT TGAATCAGCC TCCCTTCCCG ATGAAGCCTT AGTGGCGTTA GACCTGAGTG AAAAAGCAAA AGCATTTGAG TCATCAAGTG TTGAGTCTGA CTCAGCGGCA CCTGCCATCG AACCTGCTAC AGGCGCGGTA AGTGCGGACA AACGTGCCGA GCCACAGGCT GAATCTAAAG TAGTGGCAAA AACAGAGTCA AAATCCATTG TAAAAGCAGA GAAAAAACCT ACCATTAAAC CTTCATCAGC CTATACCTTG CAGCTGGGTA GCTTTAATAA TGCGGCTAAT GTTAGAGGGC TGGTAAAGCA GTTAAGAGGG AAGGGCTTTA ATGCCTATAC ACTTCCTGTA ACGCCGATAG ATGGCAAGCT CACTAAGGTG TTCGTTGGAC CTGAACTCTC GAAATCAAAA TTGCAGTCTC TTCAATCGGG TATTGAAAAG CTGACAAAAT TGAAAGGCCG TATCGTCGCC TACGAACCAA CGGCTTCTTA A
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Protein sequence | MSSHFQNRLV GIIVLVALGV IFLPDILDGK KEHQVEQFSE IPLRPEVESA SLPDEALVAL DLSEKAKAFE SSSVESDSAA PAIEPATGAV SADKRAEPQA ESKVVAKTES KSIVKAEKKP TIKPSSAYTL QLGSFNNAAN VRGLVKQLRG KGFNAYTLPV TPIDGKLTKV FVGPELSKSK LQSLQSGIEK LTKLKGRIVA YEPTAS
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