| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1653 |
|---|
| Symbol | |
|---|
| ID | 5610951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1979683 |
|---|
| End bp | 1980948 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932523 |
|---|
| Product | dihydrofolate synthase |
|---|
| Protein accession | YP_001473392 |
|---|
| Protein GI | 157374792 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0285] Folylpolyglutamate synthase |
|---|
| TIGRFAM ID | [TIGR01499] folylpolyglutamate synthase/dihydrofolate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0133997 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAG CTCCTGTAAA AGACACAAGT TTAGATAATT GGTTAGATTA TCTTTTAGCT
ATCCATCCTA CCGAAATTGA GATGGGGCTG ACTCGGGTAT CTGAGGTTGC CGAACGTCTG
GAGTTGCGGG AACTGCCCGG AATTCAAGTG GTCACCGTTG CAGGGACCAA TGGTAAGGGG
ACGACTTGCG CCTTCATCGA GCAGATCTTA CTTGCATCGG GCTTAAGTGT TGGCGTCTAC
AGCTCGCCGC ATATGCTCAA TTATAATGAA CGAGTCCGTA TCAATGGTGA AGATGTCGCC
GACTCGTTTT TGATTGAAGC CTTCGAAGCC ATCAATCGTG CGCGAAATGA GATCTCTTTG
AGCTTCTTCG AATTTGCCAC TTTGGCAGGG CTCTACATAT TCAAAGCTGT CGCCCCCGAT
GTTATCTTGC TGGAGGTGGG TTTAGGTGGC CGTTTAGATG CGACCAATAT TATCGATGCC
GATATTTGTG TGGTGACGTC GATTGATATC GATCATCAGG AATACCTCGG GGACACGCGC
GACTTGGTTG GCCGTGAGAA AGCGGGAATT TTCCGCAACT CAAAGCCGGC TATTGTCGGT
GAACCCAATA TGCCGGATTC AATTTTTGAT GTGGCACAAG AGGTCGGGGC AAATATTTAC
CAAGTTAATC AAGCCTTTAC TTATCAGGCC GACGCTGGTT CTCAGGCCTG GAAATTTAAT
GGCCAGAGAC TGACACTCGA TAACATCCCT CTACCTCAAT TACCGCTACC TAACGCGGCT
ACAGCCTTGG CGGTTATTGA GCATGGTTGG CCGGAATTGT CGGCCGATGT CATTAAAAAG
GCGATTGGAG AGGCGAGGCT AGGTGGCCGA TTAGAAACCG TCAGCCAGGC CCCTTTGGTT
CTACTCGATG TGGCTCATAA CCCCCACGCC GCACGCTATC TGGCGAGCCG CCTCGAAGCG
TATAAACCTA AGCGCGTATT TGCGTTATGT GGCATGCTAA AAGATAAAGA TTGCACCGAA
GTGATTCAGA CCCTCGCTCC TCTTGTCGAT CATTGGTCGT TTACCAGGCT GCGAACCGAA
CGAAGTGCGT CGGCCGATAC ATTGAGAGGA GCATTAACGA CTCAGTGTGA TGCGCATACA
TACAAGAGTG TAGATTTAGC CTGGCAGGCG ATATCATCTG AGATTCATGA TGAGGATATG
GTTATCGTCT TTGGCTCTTT TTACACTGTT GCAGAATTTA AAGGCCTTCA GATAGGAACG
GTGTGA
|
|---|
| Protein sequence | MPKAPVKDTS LDNWLDYLLA IHPTEIEMGL TRVSEVAERL ELRELPGIQV VTVAGTNGKG
TTCAFIEQIL LASGLSVGVY SSPHMLNYNE RVRINGEDVA DSFLIEAFEA INRARNEISL
SFFEFATLAG LYIFKAVAPD VILLEVGLGG RLDATNIIDA DICVVTSIDI DHQEYLGDTR
DLVGREKAGI FRNSKPAIVG EPNMPDSIFD VAQEVGANIY QVNQAFTYQA DAGSQAWKFN
GQRLTLDNIP LPQLPLPNAA TALAVIEHGW PELSADVIKK AIGEARLGGR LETVSQAPLV
LLDVAHNPHA ARYLASRLEA YKPKRVFALC GMLKDKDCTE VIQTLAPLVD HWSFTRLRTE
RSASADTLRG ALTTQCDAHT YKSVDLAWQA ISSEIHDEDM VIVFGSFYTV AEFKGLQIGT
V
|
|---|
| |