| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1652 |
|---|
| Symbol | truA |
|---|
| ID | 5610950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1978822 |
|---|
| End bp | 1979607 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932522 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_001473391 |
|---|
| Protein GI | 157374791 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0120499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGTAG CGTTAGGTAT CGAATATGAT GGCCGTCAGT ATTTTGGTTG GCAGCGACAG
GCTGAAGTTG ACTCAGTACA AGCTCAGTTA GAGCGCGCCC TATCTAAGGT GGCCAATGAG
CCTATTAGGG TTCACTGCGC CGGAAGAACC GACGCGGGCG TCCACGCCAC CGGCCAGGTT
GTTCATTTTG AAACAAATGC GATACGTAAA GATTCGGCAT GGACCTTAGG TGTCAATGTT
AATCTACCCG ATGATATCGC CGTAAGGTGG GTAAAGATTG TCGATGATGA GTTTCATGCT
CGTTTCTCGG CGACAGCGAG ACGCTACCGA TACATGATTT ATAACTATGA TTTTCGCCCC
GGTATATTAC GCTCGGGTGT GAGTCATTAT CGAGGCAATA TCGATGCCGA TATCATGCAC
CAGGCTGCAC AGCAGTTTGT TGGAGAGCAC GATTTTACCA GCTTCAGGGC GCTCCATTGT
CAATCTAAGA CCCCTTTCAG AAGTGTTCAT GAGGTAAATG TTACCCGTCA AGGCATGTAT
ATCTGTGTAG ATATTAAGGC GAATGCTTTT CTTCACCATA TGGTACGTAA TATTGTCGGT
ACTCTGTTAG AAATTGGTTT GGGTAATCAG CGTCCCGAGT GGATCCCCCA ACTACTGGAT
CTAAAAGACA GGAGCCAGGC GGCACCAACG GCCAAACCTA ATGGGTTATA TATGGTCGAT
GTCACGTATC CTGAGCGCTA CGAGCTGCCT AAGCTCGCCC TGGGTCCGCT GTTTATGTTG
GATTAA
|
|---|
| Protein sequence | MRVALGIEYD GRQYFGWQRQ AEVDSVQAQL ERALSKVANE PIRVHCAGRT DAGVHATGQV
VHFETNAIRK DSAWTLGVNV NLPDDIAVRW VKIVDDEFHA RFSATARRYR YMIYNYDFRP
GILRSGVSHY RGNIDADIMH QAAQQFVGEH DFTSFRALHC QSKTPFRSVH EVNVTRQGMY
ICVDIKANAF LHHMVRNIVG TLLEIGLGNQ RPEWIPQLLD LKDRSQAAPT AKPNGLYMVD
VTYPERYELP KLALGPLFML D
|
|---|
| |