| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1651 |
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| Symbol | |
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| ID | 5611320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1975792 |
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| End bp | 1978629 |
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| Gene Length | 2838 bp |
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| Protein Length | 945 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932521 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473390 |
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| Protein GI | 157374790 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000121455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTTC GCACTTCGTA TCTTGTCGGT CTGATGGCCT CAGCTCTACT CGTTTTTACT
GCTAATCCGC TAAATCACGC CTATGCCGCT GACCCTCTGA AGATCACCGG CCCCGACGGC
GAGGTGAGGA AGACGAACCG GCAATATGGA CCGACTCAGT CGTCTGATAC TTTTTGGAGC
ATAGCTCAGC GGGTACGGCC AGATAATAGC GTCGATATCT ACCAAGTGAT GGCGGCAATC
TATGATGCTA ATCCCCATGC TTTTTCAAAC GCGAACTACA ATAGTCTTGA GAGAGGCATG
ATACTACTCA TCCCCTCTAA AGAGGTGATG TTAGCGATAC CTAAGAGCAT GGCAAAGGAA
CGCGCCGCCC GAGATGATAA AGGCTGGAGA AAGGCAACCG CTACGGCAAA AACATCTCAA
CCTAAGCCGG TAATCCTTCC GGAAACAACC CCGAGTGTAA CTAAGCCCGT TACAGAAACG
ACCTCTCCTT CAATCTCTAC TACGGCTACG CCTGTCACTG CAGATACCGC AGACCTCGAA
GGTTTGACCG CTAAGCTTGA GGCCGCCGAA GAAAAAGCGT TACAACTGAC CGATGAGTTG
GCCAGAGCCG AAGACCAATT GAATATTGGC AGCCGGGATA CAGATTCACT GCAAGGTAAA
ATCGATGAGT TAAATGAGCA GATCTCGCTT TTAAAGGAGC AGCTTCAGAT AAGTAAGCAG
CAAAATGAAT CGCTGAATGC CGAAGTGCAG ATGTTAAAAG AACAAGTTGC CACAATGCAG
CAACCAGAGG TCGAAGAGGA CTCAGATCTT TGGCGCAGCC TAATGGGTAA CCCATTGCTG
TTGATCCTTG GTGCTGCCAT TCCGGCGCTG TTAGTACTTA TTCTGTTCTG GTTATTCCTC
AAGCGTCGCC GTAGTGAGGG CGAGAGTGAA GATGATAAGG AGGAGCCAGT ATCTGAATCT
GAGGCGCCAC AGCCAACACC GGCACCTGAA AACCTGGAAG CCCGCGATGA TGTAGAGGCC
ATGGCGGTAC ATCTCGACAC CGATGAAGAG GAATCGATAG ATTCTCTGAT GAACATTGAC
TCGAGTGAGC TACAACCCGA GGTCGACTTG TCGACGGAGC AGGATGTGTT CGTCGATTCC
GGAGAGTCTG GTACCGAGGA GCAAGCCCTT GAAGAAGCCG TTGAAGAGGA GGGACAGTCG
TTAGATGACC TTTGGGCCGA GGCGATGGGA GAGCAGGACG AAGAGGAGCC TGGTCCCGAT
GCGAGTGCCG ATGAGGATGA TTTAGACTCA TTGCTTGCCG GATTCGATGA GGAGCCTGCG
CCGGTTGAGA CGGTAGCGCA AAGCAATGGC GAAATCGTAT CTGCAGATGA CTTAGATTCT
TTATTAGCGG ACTTAGATGA ACCTGCCACT GAAGTTGAAA CCGATCTCAG TGATGAGATT
GCGGCCGAGT TAGAGGTCGA TAGTGCGGAT GACAATGTCA GTGAAGAGGA TCTGGACTCA
CTACTTGCCA GCTTCGATGC CCCTCAAAAT GAGCCAGAGG TCGATGAAAC CGAACTGGGG
ACAGAACCGG ATCTTAGTGA CGAAATAGCG GCCGAGTTAG AGGCCGATAG CGCGGATGAC
AATGTCAGTG AAGAGGATCT GGACTCACTG CTGGCAAGCT TCGATGCTCC GGCAGCTGAA
GCCGAGCCAG AAGCTGAGCT AACCGATGAG ATTGCGGCCG AGTTAGAGAG TGAAGAAAGT
CCGGATGACA CTGTCAGTGA AGAGGATCTG GACTCACTGC TGGCAAGCTT CGATGCTCCG
GCAGTTGAAG CCGAGTCAGA AGCTGAGCTA ACCGATGAGA TTGCGGCCGA GTTAGAGAGT
GAAGAAAGTC CGGATGACAA TGTCAATGAA GAGGATCTGG ACTCACTGCT GGCAAGCTTC
GATGCTCCGG CAGCTGAAGC CGAGCCAGAA GCTGAGCTAA CCGATGAGAT TGCGGCCGAG
TTAGAGAGTG GCGAAAGCCC GGATGAAAAG GCCGATGAAG AGGAACTGGA CTCTCTGCTG
GCTGATTTCG ACATGACTCG AGAAGATATC GAGCCTAGCC TCGAACCCAG CCCGGAATCA
GAGTTAGATG AAGACCTTAC TCAGAGCCAA GCAGAAGCCG ATACCGCTTC GGGTAAAGAT
GAAGCGCTCG ATGCACTATT AGCCGATTTA GAGTCGGTGG ATAATAAACC GAAAATGGAT
CCTGTTGCTT CGAAGGGAGG CAGCGGCATG TTTGCAGATC TTAAAGGCAG TAAGAAGGTC
GATGATAACA GCTTAGAGTG GGATGGCTCG TTAGCCGATT TTGGTGGTAA AGATGAGAGT
CCACTATTAA ACGATGATGA ACTCACCGAC TCGCCGGAAG AGGTAAGTCC CGATGTTAGC
CAAGACCTGG AGTTAGTACC AGAGGAGGTT GAAGAGAAGT TAACCGTCGA TGAAGCCCTG
GCTGCACTCG ATGCCAAAGA AAAAACCGTG TCACCAGCGG TAGAGGTTGC GGAGCACGAC
CTTACCAGCT TCCAGAGTGA CAATGGCTTT ATCGATATTG ATCGCTTACT CAATGAAGCA
GATGAAGATG TCGTCGAAAC GGATCAATAT AAAGAACTCG ATGTCGATAT GGGTGAGCTC
GATAGTCTGA TGGGCAACGC CTCAATGGTC GATGTCGATG ATGAGGAAAA CTCCGTTAAT
GCGAAATTGG ATTTAGCTCG CGCCTACATT GAAATCGATG ATACCGATAG TGCAAAAGCC
CTGCTTAAAG AGGTTCAGCT GGACGGCAAC GAAAGACAAC AAAGTGAAGC CGATGGCTTA
TTTAAAACCT TAGATTAA
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| Protein sequence | MNFRTSYLVG LMASALLVFT ANPLNHAYAA DPLKITGPDG EVRKTNRQYG PTQSSDTFWS
IAQRVRPDNS VDIYQVMAAI YDANPHAFSN ANYNSLERGM ILLIPSKEVM LAIPKSMAKE
RAARDDKGWR KATATAKTSQ PKPVILPETT PSVTKPVTET TSPSISTTAT PVTADTADLE
GLTAKLEAAE EKALQLTDEL ARAEDQLNIG SRDTDSLQGK IDELNEQISL LKEQLQISKQ
QNESLNAEVQ MLKEQVATMQ QPEVEEDSDL WRSLMGNPLL LILGAAIPAL LVLILFWLFL
KRRRSEGESE DDKEEPVSES EAPQPTPAPE NLEARDDVEA MAVHLDTDEE ESIDSLMNID
SSELQPEVDL STEQDVFVDS GESGTEEQAL EEAVEEEGQS LDDLWAEAMG EQDEEEPGPD
ASADEDDLDS LLAGFDEEPA PVETVAQSNG EIVSADDLDS LLADLDEPAT EVETDLSDEI
AAELEVDSAD DNVSEEDLDS LLASFDAPQN EPEVDETELG TEPDLSDEIA AELEADSADD
NVSEEDLDSL LASFDAPAAE AEPEAELTDE IAAELESEES PDDTVSEEDL DSLLASFDAP
AVEAESEAEL TDEIAAELES EESPDDNVNE EDLDSLLASF DAPAAEAEPE AELTDEIAAE
LESGESPDEK ADEEELDSLL ADFDMTREDI EPSLEPSPES ELDEDLTQSQ AEADTASGKD
EALDALLADL ESVDNKPKMD PVASKGGSGM FADLKGSKKV DDNSLEWDGS LADFGGKDES
PLLNDDELTD SPEEVSPDVS QDLELVPEEV EEKLTVDEAL AALDAKEKTV SPAVEVAEHD
LTSFQSDNGF IDIDRLLNEA DEDVVETDQY KELDVDMGEL DSLMGNASMV DVDDEENSVN
AKLDLARAYI EIDDTDSAKA LLKEVQLDGN ERQQSEADGL FKTLD
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