| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1649 |
|---|
| Symbol | |
|---|
| ID | 5611318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1973396 |
|---|
| End bp | 1974559 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932519 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region |
|---|
| Protein accession | YP_001473388 |
|---|
| Protein GI | 157374788 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0273516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC TTGCCGACGA AAACATGCCT TATGTGGAAC AGCTTTTTGG TGATCTTGGT
ACGATTGAAG CCGTTAATGG CCGTACATTA ACTTCTGAAC AGGTTAAAGA TGCCGATGTG
CTCTTGGTGC GTTCGGTGAC TAAGGTTAAT CAGGCACTGT TGTCGCTCAA TACTAATCTT
AAGTTTGTCG GTAGTGCCAC CATAGGCACA GATCATATCG ACCAGAGCTA TCTTGCCAGC
CAAGGGATCC CGTTTACCAA TGCACCGGGC TGTAATGCCA CGGCGGTGGG GGAGTTTGCC
TTCATCGCCA TGCTGGAACT GGCGAAGCGT TTCGATACCG AGCTTAAAGG CAAGGTTGTG
GGGATTGTTG GTGCGGGTAA TACCGGCTCG GCGGTGGCTA AGTGTCTTGA GGCCTATGGG
GTCGAGGTGT TGCTTAACGA CCCATTAATC GAAGCCGATG ATCCTCGTAC ATTTGTCTCT
CTCGAGGCGT TAACCGAAAG AGCCGATGTG ATCAGCTTGC ATGTTCCATT GACTAAAGAT
GGCGCGCATA AGACTTGGTA TCTGTTCGAT GAGCAGAGGC TGCAAAACTT AAAGCCTGAT
ACCTGGCTGC TTAACTGTTG CCGAGGGGAG GTTATCGATA ATCGCGCCTT GATAAAGATA
AAGGCGCAAC GGCCGGATAT CAAACTCGTG CTCGATGTAT GGGAAGGTGA GCCCGAACCT
ATGCTTGAGT TGGTGCCCTT TGTCGAGTTA GCGACGCCCC ATATTGCGGG TTACAGTCTG
GAGGGGAAGG CGCGCGGTAC TTATATGCTA TATCAGAAGC TGATGGCAGT ACTGGGCATC
GATGCAGATA AGTCGATGAC ATCTCTGTTG CCCACGCTAT GGTCTCAGCA GGTGTCGCTG
GATGAGCTCC CCTCAGAGAA GGCATTGCTT CAACTGTCTC GTTTTGTCTA CGATCTGCGT
GACGACGATG AGCTGTTTAG AAAAACGCTG CTTGATGATT CTTCAATAAA AGCGGGTGAA
AATTCCGCTA ATAACAATGG GTTTGACCTT ATGAGAAAAA ATCACAAGCA CAGACGCGAA
TTTAGTGCGT TAAAGCTAGC AAGTGCGGGG CAATCTGATG TAGATTGGTT GCTCAATTTA
GGATTTTCAG GAGTTGGTCG GTAA
|
|---|
| Protein sequence | MKILADENMP YVEQLFGDLG TIEAVNGRTL TSEQVKDADV LLVRSVTKVN QALLSLNTNL
KFVGSATIGT DHIDQSYLAS QGIPFTNAPG CNATAVGEFA FIAMLELAKR FDTELKGKVV
GIVGAGNTGS AVAKCLEAYG VEVLLNDPLI EADDPRTFVS LEALTERADV ISLHVPLTKD
GAHKTWYLFD EQRLQNLKPD TWLLNCCRGE VIDNRALIKI KAQRPDIKLV LDVWEGEPEP
MLELVPFVEL ATPHIAGYSL EGKARGTYML YQKLMAVLGI DADKSMTSLL PTLWSQQVSL
DELPSEKALL QLSRFVYDLR DDDELFRKTL LDDSSIKAGE NSANNNGFDL MRKNHKHRRE
FSALKLASAG QSDVDWLLNL GFSGVGR
|
|---|
| |