| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1648 |
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| Symbol | |
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| ID | 5611317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1968966 |
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| End bp | 1973090 |
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| Gene Length | 4125 bp |
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| Protein Length | 1374 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932518 |
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| Product | histidine kinase |
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| Protein accession | YP_001473387 |
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| Protein GI | 157374787 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.102759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAAT TCGCAGACAT TCGTCTTCGT CCCAAAATGC TTGGATTGTT ACTTATATTT
GGTATTTTAC CTATGATTGC AGTCGCAATT CATAGCAGTC GATTGAGCTC AGAAGCACTG
ATTGAAAAAT CATATCAAGG GCTCAGTTCA ATACAGTCAT TGAGAATCTC TGCTATCGAT
GATTTTTTCC GCGAACGCTT ATCTGGGTTA GATACATTAG CTCATACGGG ACAACTTAGT
GAATTTATAG AACAGGTGGG TAGTGAACAC GAAATATTAC CCTCTATCAT AGCTTCCCGT
TACGATCCCT TTTTTACCTC CTTTGTAGAC GATTATGGCT ACGATGATCT GGTTATTCTT
AAGCCTGAAT CAGGAGAATT ACTTTATTCA TTAACTAATA GAAACCGGGT TGGAATCAAG
CTCAGTGAAT ATACCGGTGA TCCGGCTCTC AAGCAGGCTT GGTCAAAAAC AATGAATACC
CGCAAGCCCA TTTTTTCAGA CTTTGGCGTA TTTAACGTAA ACGACGAATC GAAGCGTCAG
CAAAATGCTT ACTTATCCAG CCCTATTTGG AACAGTAATG GTGAAATGAC TGCCGTAATA
GCAGTGAGAA TTCTACCCGA TTTAATCAAT GATATTGTCA ATTCACGGAT TGGAATGGGG
GCAACGGGTG AGTCATACAT TATTGGATTA GATAACCAAG ATAGCCAAAT AGAGTTACGT
AGCGATATTA CTACGATGGG CAATGGCAGC TATCGCGTAG GGTATCGCTT TGAAAAGGAT
TTAGATTATT GGAACGATGC GATAGATGCT GGCACCAGTG GGGGAAAAGA TACCTATGTT
GATAGTTCAG GCCATCCTGT TTTAGTCGTT TTTAATCAAC TCAATGTACC AGGGTATCAA
TGGTTTCTAA TTTCAAAAAT CAATGAAGAT GAAGTTACCC ACCCTATTAC ATCGCTTTAT
CAAGCAGTGA TAGTGGCAAC TGCTGCATTG ATTTTATTAG TGATATTTGT AGCCGTGAAA
TTTTCTCGTT CAGTCACAGA GCCACTTATT GAATCGATGA AGTTTGCCAA AGATATCTCT
GCTGGCACCT TAAGTTCAAA ATTGACCTTA CAACGTAAAG ATGAACTTGG TGATCTTGGT
ATTGCCTTAA ATGGTATGGC CGTACAACTG CGTGAGCTTG ATTGGATTAA GTCAGGTAAA
GAAGGGTTAG ATGATAAATT ACGTGGTGAC ATTGAGCTAT CAGAACTCTC CAGCTTGTTT
ATTAATTTCT TTACTAAACA TATGGGTTGT CAGCTAGGGG CCTTATACCT ATTTGAAGAG
GAAAAATTAC ACCTCAGAGC CAGTTATTGC TTTACGGACA GACAAGGCAA TTTCAACCAA
CTTGCACTTG GGGAGGGCAT GGTAGGGCAA GCAGCATTGG AACAGGAGAC CATTATATTC
TCTGACATGA CTCATGCTGC CCCCACATTA AACTATGGTG TTGGAGAAAC AAGCTTAAAG
AGCTTTATGT CGGTCCCCTT AATTGTGGAT GGTCATCTCG TTGGCGTAGT GCTACTTGGC
TCAACGGCAC CTTTTACCTC ACTGCAAAAG CAATTTGTAA AGGATGTGAT TAATAGTGCC
GCCATACTTT TTGATGCTGC AAATGCTCGC TTAGTCATTC GTACATTATT AGAACAAGCG
CAAAAACAAC AAGAGAACCT AAGTAAAGCC AATGATGGCT TGAAAGAATC TGAACAAGCA
TTGCAAAACC AACAAGAAGA GTTACGAGTC ACCAATGAGG AGCTGGAAGA GCAAACCAAA
GTGCTTAAAG AGTCAGAAGC TGAGCTACAA GCTCAACAGG AAGAACTTCG CGTTACTAAC
GAAGAGCTGG AAGAGCGAAC TAAAGCACTG GAAGAGCAGC AAGTTGAGAT GCAGGGGAAA
AATGATCAAC TGCATTTAGC TCAAAATGTC GTGGAAGAAA AAGCGAAAGA GTTAGCAAGC
GCAAGTAAGT ACAAATCTGA ATTTTTAGCG AATATGTCCC ATGAACTGAG GACCCCACTC
AACAGTATTC TCATTTTATC CCAGCTACTT GCCAGTAACA AAGCGGGCAA CTTAAATGAT
AAACAGATTG AATCAGCCAA AGCCATTAAC TCATCTGGAT CTGATCTGCT ATCGCTAATC
AATGAAGTTT TGGATCTGTC CAAGGTTGAA GCGGGTAAGG TCGAACTGCA AATTGAAGAT
GTGAGCTTTC AAGAGATAGA GCAAGATATT AATCGCTTAT ACCAGGATAT CGCTGTTGAT
AAAGGACTGT ATTTCGATAT TGCTCTTGCA GCCGATCTGC CGAATGAGAT CAAAACTGAC
TCGTTGCGAT TACAACAAAT CTTGCGCAAT CTACTAACCA ATGCGTTTAA ATTTACCCAT
GAAGGCGCAG TAACTCTTAG CATTACTCAG CCAACAAATG AAGTTGCAGC ACGCATGCAA
CAGCCTAAAC AATCATTAGT CGCCTTTACG GTAAAAGATG ACGGAATAGG AATTAAAAAA
GAGAAGCAAT TAGGCATCTT CCAAGCGTTC CAACAGGCTG ACGGTAGTAC AAGTCGAAAA
TATGGCGGCA CAGGTCTAGG ATTATCGATA TCTAAAGAGC TTACTCATCT ATTAGGTGGG
ACTATTTTAC TGAAAAGTGA CGAAGGCAAA GGTTGTGCGT TTACCGTTGT GCTGCCTCTT
GAGTTTCAAC CCAAAGATGA AGAAGCTGAT AAGAGCATTT TTGGTATTCC TATCATGGAA
AAAAGGGCAC TAGAACCAGA AGAGCTGCAA CCACTAAATA GCCAAGTTAA AAGTGATGCC
GATATTAACA CTAATAAACA GGCAGAAAAC ACAGATCTAC AGCTGATATC CCAAGCGGCT
GCAATCCCTA GTGTAAAGCT AAACGTAAAA GACGAAAGTT ATATCGATGA CGACAGGTTA
TCGATTGCCG CCGAAGATCA AACTTTGCTG ATTATTGAAG ATGACCGCGC CTTTGCCGGT
GTGATGCGTG ATTTTGGCCG CGAAAGAGGC TTTAAGTGTA TTGTCGCTGA AACAGGCGAA
ACAGGATTAC ATTTCGCCGA TTATTATAAA CCGAGTGCCA TTATTTTAGA TATTGGGCTA
CCCGGTATTG ATGGTTGGAC AGTGATGGAG CGACTCAAAG AAAACTCAGA GTTACGCCAT
ATACCAGTGC ACTTCATGTC GGCGAGCGAT AATAATCTCG ATGCAATGAG AATGGGAGCA
ATTGGCTATC TAACTAAGCC GGTAGACCTG AACAAACTGA ATAAAACGTT TGGCGATATT
GAGGAGATAA TTGCTAAGTC AGTTAAGAAA TTACTGATTG TCGAAGATGA CGAAATTCAA
AGGGAGAGTA TTCGCCAGTT ACTGGGTGAA GGTGATATTC ACATTGTCGG CGTGGCAACA
GGAAAACAAG CGCTACAAGA GCTAGAGACA AATCGATACG ACTGTATGAT CTTAGACTTA
GGCCTTGAAG ATCTATCCGG ATTTGAGTTG CTCGATAAAA TTCGACGCAG TGATTCAGCA
GCCAGAGTAC CGATTATCGT CTATACGGGC CGAGAGTTAA CCGTAGACGA AGAGAAAGAG
CTCAGCCGTT ATGCGGAAAG CATCATAATT AAAGGGGTTA AATCGCCAGA GCGCCTGTTA
GACGAGTCAG CCCTCTTTTT ACATCGAGTA GAGTCTCGCC TGCCGGCAGA GCAACGGGGT
ATGTTGAAAG CCGTGCATGA TAAAGAAACC GTGTTGGCTG GTAAGAAAAT CTTGTTAGTC
GATGATGATA TGCGCAATGT TTTTGCGTTA TCAAGCATTT TAGAAGACAA AGGTATTGAA
ATCGTTGTTG GTCGTGATGG TCTGGAAAGT ATCGAAAAAT TGGACCAACA TCCGGATATA
GCCCTCATCT TAATGGACAT AATGATGCCA AAAATGGATG GTTATGATGC AATGAAAGAG
ATCCGTAAAA AACGTAAATA CAAGAAACTA CCTATTATCG CCCTGACAGC TAAAGCGATG
AAAGGTGACC GAAGTAAGTG TATTGAGGCT GGAGCCAGTG ATTATTTAGC TAAACCGGTC
GACACCGATA AATTACTATC TATGTTACGA GTGTGGTTGT ACTGA
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| Protein sequence | MLKFADIRLR PKMLGLLLIF GILPMIAVAI HSSRLSSEAL IEKSYQGLSS IQSLRISAID
DFFRERLSGL DTLAHTGQLS EFIEQVGSEH EILPSIIASR YDPFFTSFVD DYGYDDLVIL
KPESGELLYS LTNRNRVGIK LSEYTGDPAL KQAWSKTMNT RKPIFSDFGV FNVNDESKRQ
QNAYLSSPIW NSNGEMTAVI AVRILPDLIN DIVNSRIGMG ATGESYIIGL DNQDSQIELR
SDITTMGNGS YRVGYRFEKD LDYWNDAIDA GTSGGKDTYV DSSGHPVLVV FNQLNVPGYQ
WFLISKINED EVTHPITSLY QAVIVATAAL ILLVIFVAVK FSRSVTEPLI ESMKFAKDIS
AGTLSSKLTL QRKDELGDLG IALNGMAVQL RELDWIKSGK EGLDDKLRGD IELSELSSLF
INFFTKHMGC QLGALYLFEE EKLHLRASYC FTDRQGNFNQ LALGEGMVGQ AALEQETIIF
SDMTHAAPTL NYGVGETSLK SFMSVPLIVD GHLVGVVLLG STAPFTSLQK QFVKDVINSA
AILFDAANAR LVIRTLLEQA QKQQENLSKA NDGLKESEQA LQNQQEELRV TNEELEEQTK
VLKESEAELQ AQQEELRVTN EELEERTKAL EEQQVEMQGK NDQLHLAQNV VEEKAKELAS
ASKYKSEFLA NMSHELRTPL NSILILSQLL ASNKAGNLND KQIESAKAIN SSGSDLLSLI
NEVLDLSKVE AGKVELQIED VSFQEIEQDI NRLYQDIAVD KGLYFDIALA ADLPNEIKTD
SLRLQQILRN LLTNAFKFTH EGAVTLSITQ PTNEVAARMQ QPKQSLVAFT VKDDGIGIKK
EKQLGIFQAF QQADGSTSRK YGGTGLGLSI SKELTHLLGG TILLKSDEGK GCAFTVVLPL
EFQPKDEEAD KSIFGIPIME KRALEPEELQ PLNSQVKSDA DINTNKQAEN TDLQLISQAA
AIPSVKLNVK DESYIDDDRL SIAAEDQTLL IIEDDRAFAG VMRDFGRERG FKCIVAETGE
TGLHFADYYK PSAIILDIGL PGIDGWTVME RLKENSELRH IPVHFMSASD NNLDAMRMGA
IGYLTKPVDL NKLNKTFGDI EEIIAKSVKK LLIVEDDEIQ RESIRQLLGE GDIHIVGVAT
GKQALQELET NRYDCMILDL GLEDLSGFEL LDKIRRSDSA ARVPIIVYTG RELTVDEEKE
LSRYAESIII KGVKSPERLL DESALFLHRV ESRLPAEQRG MLKAVHDKET VLAGKKILLV
DDDMRNVFAL SSILEDKGIE IVVGRDGLES IEKLDQHPDI ALILMDIMMP KMDGYDAMKE
IRKKRKYKKL PIIALTAKAM KGDRSKCIEA GASDYLAKPV DTDKLLSMLR VWLY
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