| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1633 |
|---|
| Symbol | |
|---|
| ID | 5611009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1947752 |
|---|
| End bp | 1952095 |
|---|
| Gene Length | 4344 bp |
|---|
| Protein Length | 1447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640932503 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001473372 |
|---|
| Protein GI | 157374772 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.15537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAACT CTCTTATGAA AATTATCATC ACTCTCCTAC TGACCCTCTG CATTTTTGGT
CAGGCATTTG CTGTAGAAGA AAGCATTGAA CCAACTCAGC AATTAGCTAA CGAACAAGTT
AGTAATTTTA CCCAAGAAAA CCATCGCGCA TCAATCCTCC TCAATTCAGA AACCTATAGT
GTTCCAGAAG GGCTATCTCA GAGCACTGTC ACCTCTCTTG TAGAAGATGA AGATGGGTAT
GTCTGGATTG GAACACTCAA TGGACTCAAT CGCTTCGACG GTAAGGAGTT TAAACATTAT
TTTGCAGATG AAACCTCTGG CCTTCCCAGC TCCTTCATTA GAAGCTTACT AATTGACAAA
AAAGGTAATT TACTGGTAGG AACTGATAAA GGATTAGCTA TATACAATGA TAAAGTGGAT
AATTTTGTTA TTGTCACAAC AAATAGTCAA CTAGAAGGAA AATCTATATG GTCACTGTTA
ACCGATCATA AAGATATTAT TGTAGGTACA GAAAACTCTA TAGTTCGTAT CAGTAACGAT
ATGAATAACA TATCAATATT ATCAGAATAT CCATTTGGAG GCATTAAAAA CTTACTTAAG
CATAATGGCA GTTACATAGT AAGAACTTAT GACGAGAAAG TTATAAGTAT AAAACAAAAT
GTAGCCACTT TGCTTCCAAC AGCATCTAAA GATCTATCAG TTTGGAATGA CACTATATAT
TCCACAAATA AAGACGGCCT ATTTTCAATA AATAAAAGCG TAAAGAAAAT AAATAACATT
TCATTCGACA GCATAAGTAG CAACCATGAT AAATTAGTTG CAATAAAAAA CAATAACATT
TACACCATAA GTAATGATAA TTCACATACA TATGTAGGTG AAGTTGATAC AACAACTAAT
AGTTTCAATA GACCAAAAGT CTATATCGGA CAGAAGTCAA TTTATATCGC AATACAAGGA
AATGGTTTTG TAAAGATTCA AGAACAAGAA AACCTAATTT CCAACATAAA CACGGACAAA
AATGTTTGGT CAATTAATAA AATAAGCGAT AATTTTTTAG TTTCTTCTGA CTCAGAAAAT
TTAATCCTAT ATGATAACAA CTTTAATACC ATCAACTCGT TCAACACATC GATTACGGGA
CCTAAATCAG CAATTGTAAA AAATAATGAT ATCTTTGTAG GTACTTCTAG TGGCTTGCTA
AAGATGGATA TTAATGGAAA TGGATTGCAC TTACTAAACA AAGATAAATT TTTTATTGTT
AAGGATGATA AAAGTTCAGA ATACATATAC GCAGGAACTG TAGCCGGTTC AATATTGAAA
TTCAATACCA ATAACTCTAC GTCTGAGAAA TTTATTATTG ATCAAGGAAA CCCAATATTT
GACATCCTTG TTGATGACAA TTCTATTTGG ATTGCTACTC AAGGCGGGTT AATTAAGAAA
ACTGGTGATA TTATTGAGCC TGTTTTCACG GAAGACTTAG TTGGTAGCTT ATATCTTGAT
AATGATGACC TTTACTTCGG AACAAGGACT GGCATATTCA AATACAATTT AAAAAGCAAA
ATAATAAGCA ATGAACACTC TAATAACAGA CCAATATACG CAATAACAAA ATTCAACAAC
TATATAATTG CTTCTTCTGT TAGCGAGGTA ATTATACTAG ATTTAAATTC CAAGCTAGAA
TATGCACTAA CTACTAATTA CGGAAGCCAA ATAGAATACA ACATCCAGTC AATTGCCAGT
CTTAAAAGCC ATATCTATAT TGGTGGAACA AGTGGGGTTA GTAGGTTTTC TATCGATGAT
TTATTTAATC ATATAGAAAA TAGAGAAGCT CCAGAAACAG TAATAGATAA ACTATTGATT
TTTAATACTC CTCAAGGTAT TGGAAATGGT ATTTTAAAAA AACAACTAAA AATAACTGAA
TCTATAAAGT TAAAATATTC AGATTATCCA TTTACACTTA ACTTCCACAC ACCTGGAGAT
TCTAGCAGTA AATCACTCTT CTCCTATCAA ATGCTTGGCC TTTCAGATGC TTGGTTAGAA
TCAAAAGGCA TTAATTCTGC TACTTATACA AACCTATCAC CCGGTGAATA TAGCTTCAAT
GTCTATGCTA TAGATCCATT AACACTTAAG AAAGGGGTTA CTAAAAGTCT GAAAGTTATA
ATAACCCCGC CTTGGTGGCT CTCAACACAA GCCAAATTTA TCTATTTAAT GCTAGCTCTG
ATAATTTCAG GAGCGATAGT TAAGGCAGTG CTTCGCCGTC GTGAAGTTCA GAACCAGATA
GCTAAATCAG AAGAAAGATT AAAGCTATCG CTATGGGGTA GCGGAGATGA GATGTGGGAT
TGGGATATAG AAACCGGACA GATATACCGC TCGAACATCT GGGGCTCGCT GGAATTCCCG
AGAGATGGAC AACGCTCCGG CGAGAATGGT GAAGAGAGTA ATATCCACCC AATGGATCAG
GAGCGCGTCA GCAGCGCACT AAATAATCAC TTTTATGGCA AAACCGATCA TTTCGAAGCC
GCCTACCGGG TAAAAGGCAA ATCAGACGAA TGGGTATGGA TCTTAGATAG AGCCAAAATT
GTCGAGCGCG ATGAAAATGA CAATGCGCTT CGAATGACTG GCACGATTAA AAATATTAAT
AACTTTAAGC ATGCCGAGGA GCAACTCAGA TTATTCGAGA GAGCGATTGC CAATATATCC
GAAGGCATGT TCATCCTTGA TAGCAACTTC CATTTTGTAG AGGTCAATGA GGCCTGCTGT
GAACTGTCTA TGACATCGAG AGATCAGTTT ATCGGTAAAC AGCTAAATTT CGATCGCTAC
CCCGAAAGTT ATTCAGATCA GATCCGCTCG ATTCTGCATC AACAGGGGAG TTGGAGCAAT
GAGGTTGAAT CGGCGAAAGG TGATGGCAGC AGTTTTTTGA TGGAGCTAAC CGTCGATGCT
ATCTATGACG AGCTTGGCCA GCTATCCCAT TATGTCGGTG TTTTCTCCGA TATCTCGAGG
CGTAAACAGC AAGAGGAGGA GCTGAGAAAG CTAACCAATA ACGACTTGCT GACTAACTTA
CCCAATCGCT CCAGCCTTAT GGTGACCTTA GGTAACCTGG TCAAGCGTGA CTCTCACCAT
ACACTGATGG TGCTGGACTT AGATAACTTC AAGAAGATCA ATGACTCATT AGGCCACCAG
GTCGGTGATG AGCTGCTAAT TAAAGTCGCT AAACGTATCG AAGACACCGT GCCCTTCCAT
ACGAGTATCT ATCGCCTGGG CGGAGATGAG TTTGCCATCT TAGTCGATAA CAACCCGGAT
ATCGGCTCCA GCGCCGTTAT CGCCAACAAG GTCATAGATG CTTTTGTGAG CCCGTTTGAA
CTAACCTCAG ATAAGGTAGT AGTAGGCTTA AGTATAGGCA TAGTACTCTA TCCGGAAGAT
GATCAAAACG AGCAAGCGTT ACTGCGTAAG GCCGATATTG CCATGTACCA CGCAAAGTCA
GGCGGCGGTA ATCGCTATCA GTTCTATTCA GAATCGCTGA ACCGAAACGC GATTCGACAG
CTCGAAGTTG AAAACCTGAT CCGCGAAGGC TTGCGTGATG ATCTGTTTGA AGTCTACTAC
CAGCCTAAAA TTGACCTCAA GTCCGGAAAA ATGGCGGGCA TGGAAGCGTT AGTGCGTCTT
AATCACCCCG AGCAGGGACT GATCCCCCCG AGTGAGTTCA TTCCTCTGGC CGAGGAGAAT
GGCTTAATCG TTGAAATTGG GGACTTAGTG ATGAAGAAAG CCTGCTTCGC GGCACAAAAA
TGGCGGAGTC AAGGAATCTT CGATGGACGC GTTGCCGTCA ATTTATCTTC ATATCAGTTC
GCTCTTCCCG ACCTTCAACA GCGAATAGAG TCAATTTTAC GTCTAACTCA GCTACCCGCA
GCCAATTTGG AGCTGGAAAT TACCGAAGGG ACCGTCATAA AACAGCCGGA GAAGGCCATC
AAGGTGATGC AGCAGCTCGC TAAGATGGGG GTTAGCCTGG CGTTAGATGA TTTTGGTACC
GGTTACTCTT CACTTTCTTA CTTGAAACGC TTTCCGATCC ATACGCTGAA GATAGATAAG
GCTTTTGTCG ATGATATAGA CAAATCAGAC AGAGACCTCA AGATGGTCGA CTCGATCATC
ACTATCGCAC ACAACATGGG CCTCTCGGTT GTCGGTGAAG GGGTGGAAGA CGCTTCACAG
CTAAGCATTT TAAAGGCGTT AAAATGCGAA GAAATACAAG GATTTATATT TAGCAGGGCT
GTAACTGAAT CGCAGTTCAC CACGCTGTTA CACAAAGAAT TTATCGAGCC TGACTTAGTA
CAAAAGAGCT CGAAAGCAAT GTAA
|
|---|
| Protein sequence | MPNSLMKIII TLLLTLCIFG QAFAVEESIE PTQQLANEQV SNFTQENHRA SILLNSETYS
VPEGLSQSTV TSLVEDEDGY VWIGTLNGLN RFDGKEFKHY FADETSGLPS SFIRSLLIDK
KGNLLVGTDK GLAIYNDKVD NFVIVTTNSQ LEGKSIWSLL TDHKDIIVGT ENSIVRISND
MNNISILSEY PFGGIKNLLK HNGSYIVRTY DEKVISIKQN VATLLPTASK DLSVWNDTIY
STNKDGLFSI NKSVKKINNI SFDSISSNHD KLVAIKNNNI YTISNDNSHT YVGEVDTTTN
SFNRPKVYIG QKSIYIAIQG NGFVKIQEQE NLISNINTDK NVWSINKISD NFLVSSDSEN
LILYDNNFNT INSFNTSITG PKSAIVKNND IFVGTSSGLL KMDINGNGLH LLNKDKFFIV
KDDKSSEYIY AGTVAGSILK FNTNNSTSEK FIIDQGNPIF DILVDDNSIW IATQGGLIKK
TGDIIEPVFT EDLVGSLYLD NDDLYFGTRT GIFKYNLKSK IISNEHSNNR PIYAITKFNN
YIIASSVSEV IILDLNSKLE YALTTNYGSQ IEYNIQSIAS LKSHIYIGGT SGVSRFSIDD
LFNHIENREA PETVIDKLLI FNTPQGIGNG ILKKQLKITE SIKLKYSDYP FTLNFHTPGD
SSSKSLFSYQ MLGLSDAWLE SKGINSATYT NLSPGEYSFN VYAIDPLTLK KGVTKSLKVI
ITPPWWLSTQ AKFIYLMLAL IISGAIVKAV LRRREVQNQI AKSEERLKLS LWGSGDEMWD
WDIETGQIYR SNIWGSLEFP RDGQRSGENG EESNIHPMDQ ERVSSALNNH FYGKTDHFEA
AYRVKGKSDE WVWILDRAKI VERDENDNAL RMTGTIKNIN NFKHAEEQLR LFERAIANIS
EGMFILDSNF HFVEVNEACC ELSMTSRDQF IGKQLNFDRY PESYSDQIRS ILHQQGSWSN
EVESAKGDGS SFLMELTVDA IYDELGQLSH YVGVFSDISR RKQQEEELRK LTNNDLLTNL
PNRSSLMVTL GNLVKRDSHH TLMVLDLDNF KKINDSLGHQ VGDELLIKVA KRIEDTVPFH
TSIYRLGGDE FAILVDNNPD IGSSAVIANK VIDAFVSPFE LTSDKVVVGL SIGIVLYPED
DQNEQALLRK ADIAMYHAKS GGGNRYQFYS ESLNRNAIRQ LEVENLIREG LRDDLFEVYY
QPKIDLKSGK MAGMEALVRL NHPEQGLIPP SEFIPLAEEN GLIVEIGDLV MKKACFAAQK
WRSQGIFDGR VAVNLSSYQF ALPDLQQRIE SILRLTQLPA ANLELEITEG TVIKQPEKAI
KVMQQLAKMG VSLALDDFGT GYSSLSYLKR FPIHTLKIDK AFVDDIDKSD RDLKMVDSII
TIAHNMGLSV VGEGVEDASQ LSILKALKCE EIQGFIFSRA VTESQFTTLL HKEFIEPDLV
QKSSKAM
|
|---|
| |