Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1629 |
Symbol | fadJ |
ID | 5611391 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1944090 |
End bp | 1946237 |
Gene Length | 2148 bp |
Protein Length | 715 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932499 |
Product | multifunctional fatty acid oxidation complex subunit alpha |
Protein accession | YP_001473368 |
Protein GI | 157374768 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02440] fatty oxidation complex, alpha subunit FadJ |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.895951 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0132209 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGA CCTTTAATTT AGCGCGTCGT GAAGATGGTA TTGCCATACT GACAATGGAT GTGCCCGGCG AAACAATGAA CACCTTGCGT GCCGAGTTTG GCCCTGAAAT TAACCAAGTA TTAGCAGAGA TAAAAGCCGA CAGCAGTATC AAAGGGCTGG TACTTATCTC CGGAAAGAAA GACTCTTTCG TTGCCGGCGC CGATATCTCT ATGCTGGATG CCTGTAAAAC GGCCGCCGAT GCTAAGCAGT TATCTCAGCA GGGACACGTT GTCTTTAATG AGCTGGAATC GTTAAAAATT CCGGTCATTG CCGCTATTAA TGGCGCGTGT CTAGGTGGTG GACTCGAATT GGCATTAGCC TGTCATCAAC GAGTATGTAG CTTAAACAGT AAGACCATGA TGGGCGTGCC TGAGGTACAA CTCGGCCTGT TACCCGGTGG TGGAGGAACG CAGAGATTAC CACGATTAGT CGGGATCACC ACCGCTCTGG ATATGATGTT GACGGGTAAG CAACTTCGTC CCAAGCAAGC GCTTAAAATG GGATTAGTTG ACGATGTGGT TCCCGAGTCT ATTTTGCTTG AGACCGCGGT AGAGATGGCA CTTAAGGGGA AGCGTGCCCC TAAAAAAGTG AAAAAGTCAT TAGTGACCCG CCTGCTTGAG GGAACTCCGC CCGGCCGCAA CATTATCTTC GACCAAGCCG GTAAGCAAGT TGAGAAGAAA ACTCACGGTA ACTATCCGGC CCCGGCAAAA ATTATTGATT GTGTACGTCA AGGCATGGCC AAAGGGCTAA CCAAAGGGTT GGAGGTTGAG GCTAACCACT TTGCCGATCT GGTCGTCTCT AAAGAATCTG AAGCGCTGCG AAGCATCTTC TTTGGTACCA CTGAGATGAA GAAAGAGACT GGCGCCGGTG ATGTTGAACC ACGGAAAGTT CATAAGGCTA TGGTGTTAGG TGGCGGGCTT ATGGGAGGAG GTATCGCGTC TGTGACGACG ACCAAAGCTA AAATACCCGC TCGAGTAAAG GATATTAGTG AGCAGGGGCT GAGTAACGCG CTTTCTTATG CTTATAAGCT ATTAGATAAG GGCGTTAAGC GTCGTCATAT GACACCGGCA GTAAGAGATA ACTTAATGTC TCTGATGACG ACAACGACAG AATATAAAGG CATTAAAGAT GCCGATATCG TCGTTGAAGC CGTGTTTGAA GATCTGAAAT TAAAGCATCA GATGGTTAAA GATGTTGAAC GTGAATGTGG TGAGAATACC ATTTTTGCCT CTAACACCTC CTCACTGCCT ATTTCGCAGA TAGCCGAGGC CGCCAGCCGT CCTGAAAATG TTATTGGCTT ACACTACTTT TCTCCGGTCG AGAAGATGCC TTTGGTTGAG GTTATCGCCC ATGAGAAGAC CTCTGCCGAA ACGATAGCCA CAACCGTCGC CTTCGCCCGT AAGCAGGGGA AGACGCCTAT CGTGGTTCAA GATGGGGCTG GTTTCTATGT CAACCGTATC TTGGCCCTGT ATATGAATGA AGCCGCTCAA CTGCTGCTGG AAGGGCAGAG TGTTGAACAC TTAGATAAGG CGCTGGTTAA ATTTGGTTTC CCTGTCGGAC CTATGACGCT ACTCGACGAA GTTGGAATCG ATGTCGGGGC TAAAATTTCT CCTATCTTAG AGTCAGAGCT TGGCGAACGC TTTAAGGCTC CTGCAGCCTT CGATAAGCTG CTTGCAGACG ATCGAAAAGG TCGTAAGAAT GGTAAAGGTT TTTATCTTTA TGGCAGCAAG GCTAAACAGA GATTTAAGAA GAAAGCGAAG CTGGTCGATG AGTCAGTCTA TGCAGTGCTT GGTTTAACGC CTACATCAAC GGATAGTAAT AACGACTCTC AGGATGTTGC TCAGCGTTGT GTCGTGCAGA TGCTTAATGA AGCCGTTCGT TGTCTGGAAG AGGGGATTAT CGCCTCACCA CGTGATGGTG ATATTGGTGC CATCTTCGGA ATCGGTTTCC CGCCGTTTCT TGGAGGCCCG TTCCATTATA TCGATTCAAT GGGAGCCGCT GAGCTGGTGG CAGTATTGGA AACTTATCAG GCCAAATTTG GAGATAGGTT TACACCTTGC GATCGTTTAA AAGAGATGGC TGAAAATGGA CTGTCCTTTT TTGAATAA
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Protein sequence | MEKTFNLARR EDGIAILTMD VPGETMNTLR AEFGPEINQV LAEIKADSSI KGLVLISGKK DSFVAGADIS MLDACKTAAD AKQLSQQGHV VFNELESLKI PVIAAINGAC LGGGLELALA CHQRVCSLNS KTMMGVPEVQ LGLLPGGGGT QRLPRLVGIT TALDMMLTGK QLRPKQALKM GLVDDVVPES ILLETAVEMA LKGKRAPKKV KKSLVTRLLE GTPPGRNIIF DQAGKQVEKK THGNYPAPAK IIDCVRQGMA KGLTKGLEVE ANHFADLVVS KESEALRSIF FGTTEMKKET GAGDVEPRKV HKAMVLGGGL MGGGIASVTT TKAKIPARVK DISEQGLSNA LSYAYKLLDK GVKRRHMTPA VRDNLMSLMT TTTEYKGIKD ADIVVEAVFE DLKLKHQMVK DVERECGENT IFASNTSSLP ISQIAEAASR PENVIGLHYF SPVEKMPLVE VIAHEKTSAE TIATTVAFAR KQGKTPIVVQ DGAGFYVNRI LALYMNEAAQ LLLEGQSVEH LDKALVKFGF PVGPMTLLDE VGIDVGAKIS PILESELGER FKAPAAFDKL LADDRKGRKN GKGFYLYGSK AKQRFKKKAK LVDESVYAVL GLTPTSTDSN NDSQDVAQRC VVQMLNEAVR CLEEGIIASP RDGDIGAIFG IGFPPFLGGP FHYIDSMGAA ELVAVLETYQ AKFGDRFTPC DRLKEMAENG LSFFE
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