Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1624 |
Symbol | |
ID | 5611386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1938941 |
End bp | 1939933 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932494 |
Product | von Willebrand factor, type A |
Protein accession | YP_001473363 |
Protein GI | 157374763 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000050495 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTGACTC TCGCATGGGC ATGGCTTTTA CTACTTCTGC CACTACCGCT TATTTTTCGT AAAAAACAAC AAGAGGTGGA GGTCAGCGGA CACCTGCATC TGCCAGGTAT TGCACAAAAT GGCCCCCAAC AGATAGAGCA ACAAGCCAGA TCGCGTAAAA TGCATTGGCT TATTTGGATA TTGTTAATCA TCGCCGTCGC TCGTCCATTA TGGATGGGGG ACCCCATAGA GCTTCCCAGT AAAGGGCGCG ACTTGATGAT GGCGGTCGAT CTCTCCGGCA GTATGCAGAT TGAAGACATG GTACTCGATG GAAAAACGGT GGATCGTTTC ACTATGATCC AAGCCGTTGT CAGCGACTTT ATTGAACGAC GTAAGGGTGA CAAATTAGGC TTAATTCTTT TTGCCGATCA CGCCTACCTG CAAGCGCCTC TCACTCAGGA CCGACGCTCC GTGGCCCAAT TTTTAAAAGA GGCGCAAATA GGGCTGGTCG GGAAGCAGAC CGCCATAGGT GAGGCTATTG CCTTAGCGGT TAAACGATTC GATAGGGTCG ATGAGAGTAA CCGCATATTA GTATTACTTA CCGATGGTTC AAACAACTCC GGCTCCATCT CGCCGGAGCA GGCGGCGGCC ATTGCGGCCA AGAGAGGCGT CAAAATTTAC TCCATCGGTG TCGGTGCTGA AGTGATGGAG AGACGCACCC TATTTGGCAA GGAGCGAGTT AATCCCTCGA TGGATCTCGA CGAAACCCAG CTCACCGCAC TGGCACAAAC CACTGGCGGT CTCTATTTTC GAGCTCGAAA TGCACAAGAG CTGGAGTCAA TCTATCAAGA GATAGATAAG CTTGAACCTA TCAGTCGGGA TCAACTCAGT TACCGACCTC AATCGGAGCT TTTTTACCTC CCTCTTGCTA CGGCCCTGCT AGTCAGTTTT TTTATGGCCT TATCGCAACT CTCACTCTTT AAACGACTCA GCATCAGATG GGGTAAACGC TAA
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Protein sequence | MLTLAWAWLL LLLPLPLIFR KKQQEVEVSG HLHLPGIAQN GPQQIEQQAR SRKMHWLIWI LLIIAVARPL WMGDPIELPS KGRDLMMAVD LSGSMQIEDM VLDGKTVDRF TMIQAVVSDF IERRKGDKLG LILFADHAYL QAPLTQDRRS VAQFLKEAQI GLVGKQTAIG EAIALAVKRF DRVDESNRIL VLLTDGSNNS GSISPEQAAA IAAKRGVKIY SIGVGAEVME RRTLFGKERV NPSMDLDETQ LTALAQTTGG LYFRARNAQE LESIYQEIDK LEPISRDQLS YRPQSELFYL PLATALLVSF FMALSQLSLF KRLSIRWGKR
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