Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1618 |
Symbol | |
ID | 5613742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1930627 |
End bp | 1931949 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932488 |
Product | aromatic hydrocarbon degradation membrane protein |
Protein accession | YP_001473357 |
Protein GI | 157374757 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2067] Long-chain fatty acid transport protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000079524 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000170841 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAAGTACT TCAACAAGAC AATTTTAGCC GTTGCTGTGA CACTTGCTAG TTCACAAGCT ATGGCAGCAG GATTCCAACT TAACAGTCAA TCAGCAACTG GACTCGGCCG CGCATTTGCC GGTGATGCAG TTATCGCTGA TAACGCATCT GTGCTATCAC GTAACCCAGC AGCAATGGCT CTGTTTGATG AAAAATCATT GTCAGTTGGT GTTGCATATG CCGATTTAGA CGTGAACGTC TCTGACGTAT CGATTCCATT GGGGAATTAC GGTAACGCAG ATGACGTAGC TGAAAACAAA CTTATTCCTA ACTTTTACTA TATCCAACCT ATTAACGACA AATGGGCATT TGGTGTCGCA GGGTTTAGTA ATTTTGGTAC AGGTACAGAT TTAACCGGCC TCGCCAACAG CAATCCAAAA GCAGCTGATG GTTCAATCGT GCCTGCACCT GCCCCGGTTG ATCTGTTAGG TAATACAGAA ATTATTACCA TGAATTTCAA TGCTAGCTTA TCTTACCGTT TCAATGATCA TTTCAGTGTT GGGGCTGGAG TAGACATCAT TTACGGTGAA GGTAACTTAA GCCGTGAAGG AAACCTTCCG TTCGGTGAAA ATGGAAGCAT GGTGCCGGTT TCTTTAGTTG ATGTAGAAGC TGATGGTGTT GCATTTGGTG GCATTATTGG TGCTGTTTAC GAATTTAATG CCGACCATCG TTTAGGCATG AGCTACCGCT TTAGCCCAGA GTTTAAAGCT ACTGGCGATG TCAACATGAC TCAACCAGGT GTAGGTGCTA TAGCATTTGA TGAAATTAAC ATCCCAATGC CAGATATATT TCAAGTTGCC GGTTTTCACC AGCTCACTGA AAAATTTGCC TTACATTACA CCGCTCAGCT AACGACATGG GGCGACTTCC ATGAAATTAC TGTTACTGAC GGTCAACTGG CAAATGGAAC ACCTGTTGGC GATGCAGTAC TTAAGCAATA TGCATGGGAT GACTCTTGGC TATTCAGTGT CGGTGGTACA TACACTATCA ATGAAAAGTG GAAAGTGCGT GCAGGTTACA TGCATGATCA GGGCGTTGTG GGCGATCTCA GTTCACTGTC TATTCCTGAC TCAGACCGCA ACTGGTACAC AGCTGGTGTA AGTTATGGCC TTAGCACACA ATCGACTATC GATATGGGCA TCGCCTTTGT CCGTGGTGAA GATGTTCATG TTACCGAGCA TAGCTCTGTG ATAGAAGCTA TCCCAGGTTT GTCTGGCGAT GTAACTGCAT ATACTCGTTC AGATGCCGTG TACTATTCAG TACAATATAG CTATCAGTTC TAA
|
Protein sequence | MKYFNKTILA VAVTLASSQA MAAGFQLNSQ SATGLGRAFA GDAVIADNAS VLSRNPAAMA LFDEKSLSVG VAYADLDVNV SDVSIPLGNY GNADDVAENK LIPNFYYIQP INDKWAFGVA GFSNFGTGTD LTGLANSNPK AADGSIVPAP APVDLLGNTE IITMNFNASL SYRFNDHFSV GAGVDIIYGE GNLSREGNLP FGENGSMVPV SLVDVEADGV AFGGIIGAVY EFNADHRLGM SYRFSPEFKA TGDVNMTQPG VGAIAFDEIN IPMPDIFQVA GFHQLTEKFA LHYTAQLTTW GDFHEITVTD GQLANGTPVG DAVLKQYAWD DSWLFSVGGT YTINEKWKVR AGYMHDQGVV GDLSSLSIPD SDRNWYTAGV SYGLSTQSTI DMGIAFVRGE DVHVTEHSSV IEAIPGLSGD VTAYTRSDAV YYSVQYSYQF
|
| |