Gene Ssed_1618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1618 
Symbol 
ID5613742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1930627 
End bp1931949 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content44% 
IMG OID640932488 
Productaromatic hydrocarbon degradation membrane protein 
Protein accessionYP_001473357 
Protein GI157374757 
COG category[I] Lipid transport and metabolism 
COG ID[COG2067] Long-chain fatty acid transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000079524 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000170841 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAGTACT TCAACAAGAC AATTTTAGCC GTTGCTGTGA CACTTGCTAG TTCACAAGCT 
ATGGCAGCAG GATTCCAACT TAACAGTCAA TCAGCAACTG GACTCGGCCG CGCATTTGCC
GGTGATGCAG TTATCGCTGA TAACGCATCT GTGCTATCAC GTAACCCAGC AGCAATGGCT
CTGTTTGATG AAAAATCATT GTCAGTTGGT GTTGCATATG CCGATTTAGA CGTGAACGTC
TCTGACGTAT CGATTCCATT GGGGAATTAC GGTAACGCAG ATGACGTAGC TGAAAACAAA
CTTATTCCTA ACTTTTACTA TATCCAACCT ATTAACGACA AATGGGCATT TGGTGTCGCA
GGGTTTAGTA ATTTTGGTAC AGGTACAGAT TTAACCGGCC TCGCCAACAG CAATCCAAAA
GCAGCTGATG GTTCAATCGT GCCTGCACCT GCCCCGGTTG ATCTGTTAGG TAATACAGAA
ATTATTACCA TGAATTTCAA TGCTAGCTTA TCTTACCGTT TCAATGATCA TTTCAGTGTT
GGGGCTGGAG TAGACATCAT TTACGGTGAA GGTAACTTAA GCCGTGAAGG AAACCTTCCG
TTCGGTGAAA ATGGAAGCAT GGTGCCGGTT TCTTTAGTTG ATGTAGAAGC TGATGGTGTT
GCATTTGGTG GCATTATTGG TGCTGTTTAC GAATTTAATG CCGACCATCG TTTAGGCATG
AGCTACCGCT TTAGCCCAGA GTTTAAAGCT ACTGGCGATG TCAACATGAC TCAACCAGGT
GTAGGTGCTA TAGCATTTGA TGAAATTAAC ATCCCAATGC CAGATATATT TCAAGTTGCC
GGTTTTCACC AGCTCACTGA AAAATTTGCC TTACATTACA CCGCTCAGCT AACGACATGG
GGCGACTTCC ATGAAATTAC TGTTACTGAC GGTCAACTGG CAAATGGAAC ACCTGTTGGC
GATGCAGTAC TTAAGCAATA TGCATGGGAT GACTCTTGGC TATTCAGTGT CGGTGGTACA
TACACTATCA ATGAAAAGTG GAAAGTGCGT GCAGGTTACA TGCATGATCA GGGCGTTGTG
GGCGATCTCA GTTCACTGTC TATTCCTGAC TCAGACCGCA ACTGGTACAC AGCTGGTGTA
AGTTATGGCC TTAGCACACA ATCGACTATC GATATGGGCA TCGCCTTTGT CCGTGGTGAA
GATGTTCATG TTACCGAGCA TAGCTCTGTG ATAGAAGCTA TCCCAGGTTT GTCTGGCGAT
GTAACTGCAT ATACTCGTTC AGATGCCGTG TACTATTCAG TACAATATAG CTATCAGTTC
TAA
 
Protein sequence
MKYFNKTILA VAVTLASSQA MAAGFQLNSQ SATGLGRAFA GDAVIADNAS VLSRNPAAMA 
LFDEKSLSVG VAYADLDVNV SDVSIPLGNY GNADDVAENK LIPNFYYIQP INDKWAFGVA
GFSNFGTGTD LTGLANSNPK AADGSIVPAP APVDLLGNTE IITMNFNASL SYRFNDHFSV
GAGVDIIYGE GNLSREGNLP FGENGSMVPV SLVDVEADGV AFGGIIGAVY EFNADHRLGM
SYRFSPEFKA TGDVNMTQPG VGAIAFDEIN IPMPDIFQVA GFHQLTEKFA LHYTAQLTTW
GDFHEITVTD GQLANGTPVG DAVLKQYAWD DSWLFSVGGT YTINEKWKVR AGYMHDQGVV
GDLSSLSIPD SDRNWYTAGV SYGLSTQSTI DMGIAFVRGE DVHVTEHSSV IEAIPGLSGD
VTAYTRSDAV YYSVQYSYQF