Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1611 |
Symbol | |
ID | 5611578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1920959 |
End bp | 1923367 |
Gene Length | 2409 bp |
Protein Length | 802 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932481 |
Product | peptidase S8/S53 subtilisin kexin sedolisin |
Protein accession | YP_001473350 |
Protein GI | 157374750 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4935] Regulatory P domain of the subtilisin-like proprotein convertases and other proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0326681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGTAA GACAATTTAC GACTTCAGCA TTGAGCCTGT CAGTTTTAGC TATCGCTATC TCTGCCACTG TTCAAGCCGC TCCCACATTC ACTCAAGGTA TCCAGTCACT GAAATCTGAC AGCAAACAAG CATCGCCTTT ACCAAAGCGA TATATTGTTA ATTTCAAAAG CAGTATTCAG TCTGAAGGTG ATGAAATCAG TGGGCTTTCT TACGAAGCTG CTCAAAATGA GGTGCTTTCT CAGCATAAGG CGTTGAACAG CGTTTCGGCT AAAGAGATGA AACGCATTGG TCGCAGTAAC AGCTACACAG TGAAATTGGA TAAAGCAGGC ATCGACTCAC TCAAAAAACG TGGTGATGTT GACTATGTCG AAGAGGATAT GCAGCGCCAT TTTCTCAGCG AAACCACTCC CTGGGGGCAA ACCTACGTAG GTGCGACATC CTTAAGTGAC TCTCAGGCCG GTAACCGTAC TATCTGTATT ATCGATTCAG GTTATGACCG CAGTCACAAT GACTTAAGTG GTAACAATGT CACCGGAACC AATAATTCCG GTACGGGTAA CTGGTTCGAA CCGGGCAACC ATAATGCTCA CGGTACTCAT GTAGCAGGTA CAATTGCGGC GATCGCCAAC AACGAAGGTG TTGTCGGTGT CATGCCGAAC CAAAATGCCA ATATCCATGT AATTAAGGTA TTTAATGAGG CAGGTTGGGG TTACTCATCT TCGCTGGTCT CTGCAGTCGA TACCTGTGTC GACAATGGCG CCAATGTTGT GACCATGAGT TTAGGTGGTA GCAGTTCCAG TACCACAGAA AAAAATGCAT TAACCGCCCA TCAGGATAAC GGTATCTTAC TCATCGCCGC TGCGGGTAAT GACGGAGATA ATACTCACAG TTATCCAGCC TCTTATGATG CAGTGATGTC AGTTGCGGCG GTCGATAACA ACAAAGATCA TGCGGCGTTC TCGCAGTACA CTAACCAAGT TGAAATTGCA GGCCCGGGTG AGGCGATTCT CTCAACCGTC ACTCTCGGTG AGGGTCGTCT TGCCGATATC ACCATTGGTG GTCAGTCTTA CTTTGATAAC GGCGTTGTCC CCCATAACCG TTACGTAAAG TCGGGCACAG ATCATGTGGC AACGCCGATT AGTGGTAGCG TTATGGGCGA GCTTGCCGAG TGTTCTGTGT CAGGCAGTAC ATTTAACTGT GGCGACATGA ACAGCAAAGT TTGTCTGGTC GAGCGTGTCG GTAACCAGGG AGCCGGTTAT CCGGAGATCG ATGCCGTCAG AGCCTGTAAT AACGCTGGCG CGAGTGCTGT CATTGTCTAT GGTAATCCCG CACTGCCCGG CCTTCAGAAC CCCTTCCTGG TCGATACCAA CAATGAAGCT GCTATCGTAT CAGTATCGGT AGACAGGGCA ACGGGTCAGG CTCTTCAGGC CCAAGTAGGT TCAACGGTGA CCGTTGAAAA TACTGCCAAC GAAGATTATG AATATTATAA CGGTACCTCT ATGGCGACCC CTCATGTATC GGGCGTTGCC ACACTTGTCT GGAGTCATCA CACTGAGTGT GGCGCAGCGC AAATACGTGC GGCACTTAAC GCGACTGCCG AAGATCTTGA AACGGCGGGC CGTGATGATA AGACCGGTTA CGGCTTGATC GACGCCGTGG CAGCCGACAC CTATCTGGAT GCTTCTTGTG ACGGACCGGT CGATCCCGGT ACTGGAACAG GAACCGGTGG TGCTGAGTTA CAAAATGGCG TAACTAAAAC AGACTTAGCC GGAGCAAAGA ATGAAGAACT TCATTTCTCT TTAGATGTTC CTGCTGGTGC GACAGACTTA AGCTTCACGA TGAGTGGTGG AAGCGGTGAT GCCGATCTGT ATGTTCAATA TGGAGCAGCC CCGAGTACGA GTAGCTATGA CTGTCGTCCA TGGAAAACAG GCAATAGTGA ATCTTGCCCT ATCACCACAA CGGAATCCGG AACTTACTAT GTAATGGTTC AAGGCTATAG TGCATTTAGT GGTATCAATT TGGTCGCTAA CTATACTGAA GCAACGGGTG GAAACACAGG CGGTGTGGCG AGCTACACCA ATACTAACAG CTACTCTATA CCTGACAATA AAGCTGCAGG GATCAGCAGT CCAATATCTG TGAGCCGAAG TGGTGATGCA GGCACGGTAT CTGTGACAGT CAACATCACC CACACCTATA TCGGTGATCT GCAGGTTGAA CTTCATACTC CAAGCGGTGA AGTGGCTATC TTGCACGATA ACACGGGGAG CAGCACAGAT AACATTAACC AGACCTACAC CGTCGATACC ACTGGCATAG AATCTGCCGG AGAGTGGAAG TTAAAAGCGG TAGACAGTGG TCGCCGTGAT ACGGGTAGCA TCGACTCTTG GGAGATAAGC TTCCAATAA
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Protein sequence | MTVRQFTTSA LSLSVLAIAI SATVQAAPTF TQGIQSLKSD SKQASPLPKR YIVNFKSSIQ SEGDEISGLS YEAAQNEVLS QHKALNSVSA KEMKRIGRSN SYTVKLDKAG IDSLKKRGDV DYVEEDMQRH FLSETTPWGQ TYVGATSLSD SQAGNRTICI IDSGYDRSHN DLSGNNVTGT NNSGTGNWFE PGNHNAHGTH VAGTIAAIAN NEGVVGVMPN QNANIHVIKV FNEAGWGYSS SLVSAVDTCV DNGANVVTMS LGGSSSSTTE KNALTAHQDN GILLIAAAGN DGDNTHSYPA SYDAVMSVAA VDNNKDHAAF SQYTNQVEIA GPGEAILSTV TLGEGRLADI TIGGQSYFDN GVVPHNRYVK SGTDHVATPI SGSVMGELAE CSVSGSTFNC GDMNSKVCLV ERVGNQGAGY PEIDAVRACN NAGASAVIVY GNPALPGLQN PFLVDTNNEA AIVSVSVDRA TGQALQAQVG STVTVENTAN EDYEYYNGTS MATPHVSGVA TLVWSHHTEC GAAQIRAALN ATAEDLETAG RDDKTGYGLI DAVAADTYLD ASCDGPVDPG TGTGTGGAEL QNGVTKTDLA GAKNEELHFS LDVPAGATDL SFTMSGGSGD ADLYVQYGAA PSTSSYDCRP WKTGNSESCP ITTTESGTYY VMVQGYSAFS GINLVANYTE ATGGNTGGVA SYTNTNSYSI PDNKAAGISS PISVSRSGDA GTVSVTVNIT HTYIGDLQVE LHTPSGEVAI LHDNTGSSTD NINQTYTVDT TGIESAGEWK LKAVDSGRRD TGSIDSWEIS FQ
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