| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1607 |
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| Symbol | |
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| ID | 5611662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1917303 |
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| End bp | 1918022 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932477 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001473346 |
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| Protein GI | 157374746 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.163286 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATC AAAAGATTAA GACTGCGACT GTCGCCGCAT GTTGTGGTGT TGTCGGCAGG
GCCCTGGTGG ATGAGTTAGT CTCGACCGGT GCCTCAGTGG TGGGCTTTTG TCGGCCGGGT
GATGAAGCCA GAGCAAAAGA GTTAACCTCT AAGTACCCAG GTAAATTTAC CGTACTATTT
GGCGAACTCA CCACATCCCA AAGCGCTAAA GAGCTGGTTA CACAGTCACT CGAGATATTA
GGTGGCACCA TAGATGCGCA CTATCACGCT GTAGGTGTGT ACTCCAGGAG CAGCTGGAAC
GATGTCAGTG AAGAGGAAGT GGCAAGGCTG TGGAGCTCAA ACTTCACCAC AGCCTGGAGC
CTTGGTCGTG AAATCTTCGA TGTGATGAAG AGTCAGGGCT TTGGATCCTT GATGTTTGTT
TCGGCAAGAG ACACGATTCG TTCAGCTCCG GCAGGGATGG GACCTTATCT TGCATCCAAA
GCGGCACTCA ATATGTTTGT GCAGAGTCTG GCTTCAGAGG GCGTGCCTTT CGGCATACGG
GTCAATGCGG TATTGCCTAC TATCATAGAC ACTCAGGTTA ACCGGGAGGC GATGCCGGAT
GAAGATCCAC TTAACTGGGT TAACCCTGAG CAGTTAGCCG GAGTGATGCT TGATCTCAGC
CAGTCGTCAC GCGCTAACGT GTCCGGTGCC TTGATCCCGG TTCAGGGCAA GATGATATAA
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| Protein sequence | MNNQKIKTAT VAACCGVVGR ALVDELVSTG ASVVGFCRPG DEARAKELTS KYPGKFTVLF
GELTTSQSAK ELVTQSLEIL GGTIDAHYHA VGVYSRSSWN DVSEEEVARL WSSNFTTAWS
LGREIFDVMK SQGFGSLMFV SARDTIRSAP AGMGPYLASK AALNMFVQSL ASEGVPFGIR
VNAVLPTIID TQVNREAMPD EDPLNWVNPE QLAGVMLDLS QSSRANVSGA LIPVQGKMI
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