| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1605 |
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| Symbol | |
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| ID | 5611660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1915261 |
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| End bp | 1916148 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932475 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473344 |
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| Protein GI | 157374744 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.25782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGA TCACCAGACT GCATTACTTT AATTGTGTCG TAGAAACAGG AAGTATCTCT
GAGGCGAGCC GGGTGTTCGA TGTTCAGCCC TCATCGATAT CCCGTCAACT TATCGCATTA
GAGAAAGAGT TGGGAATAAG CCTGATCAAC CGCACGACCC GTAATATAGG CCTCACTGAA
GCTGGGCTCA CCTATTACCA ATATTCTCAA CGAATCGTCT CCGAGCTTGA CGAAGCCCAC
AGAGCGGTCA ACGATCTACA GCAAAATCCA AAAGGGTCTC TGAAGGTCAG TATGACTGTC
GGCTTCGGCG AAAGCTGCGT GCTTCCCTTG GTCCCCGTCT TTATTAGCCT GTTTCCTGAC
ATTAAAATAG AGCTCGAGCT AACCGAACGG GTCATAGATC TGGTTGAAGA CAATGTGGAT
ATTGCTATTC GAAGTGGCCG CTTGCCGGAC TCAAATCTCA TCGCCAGAAA ACTTGCCGAC
AACAATTTTC TACTTTGCTC CAGTCCCCAG TACCTGGCCC AACACGGCAG CCCTGAAACC
CCTCAGGCAT TAACGGATTT TGATTGTATT CGATACGGAT ACGCGGGATG GCGAGACTGG
TACCTGATGG ATGAGAAACC TAAGAAGTTA TCGATTAGAG ATGGGATCAC GGTAAATTCA
GTCAATGGCC AGAAACAGTT ATTGCTGAGT CATGCAGGCC TGGCCCTGAT GCCATTATGG
GCGGTCCGCG ATGAGCTTAA AAATGGCAGT CTGACTCATG TTCTCAACCA GCATACATTC
AGTCCTTATG AAAGCATGAG CTCAACCTAT GCCATCTATT TAAGAAGAGA GCTTATCTCT
CCAAAAATCA GGGTGTTCCT GGATTACCTG AAAGAACATT TAGATTAA
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| Protein sequence | MSMITRLHYF NCVVETGSIS EASRVFDVQP SSISRQLIAL EKELGISLIN RTTRNIGLTE
AGLTYYQYSQ RIVSELDEAH RAVNDLQQNP KGSLKVSMTV GFGESCVLPL VPVFISLFPD
IKIELELTER VIDLVEDNVD IAIRSGRLPD SNLIARKLAD NNFLLCSSPQ YLAQHGSPET
PQALTDFDCI RYGYAGWRDW YLMDEKPKKL SIRDGITVNS VNGQKQLLLS HAGLALMPLW
AVRDELKNGS LTHVLNQHTF SPYESMSSTY AIYLRRELIS PKIRVFLDYL KEHLD
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