| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1594 |
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| Symbol | |
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| ID | 5611760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1903572 |
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| End bp | 1904969 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932464 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001473333 |
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| Protein GI | 157374733 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.509668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCACC ACGAGTTAGG TTATAATGGT CAGTCGAATC AATTTTGGAG TACACCTTTG
CAATTTACCG ATTTTTCACT GGATACGCGT CTGTTAAAGA CATTGGATCA TATGGGCATA
GAAAAGCCCA CGGAGATCCA ACAGCAGGCG ATACCAGTAG GCCTGTCAGG CAAAGATCTG
ATGGCATCAT CAAAAACAGG CTCAGGTAAA ACCTTAGCGT TTTTGTTACC GGCAATGCAG
AGGATTATTT CCACAAGAGC ATTAAGTAAG CGAGACCCGA GGGTATTGAT CTTATTGCCG
ACCCGCGAAC TCGCTAACCA GGTATACAGC CAGTTACGCT TGTTAGTCGC CAACACACAA
TATAAAGCGG TCAAAATCTT AGGCGGTGAA AACTTTAATG ATCAGGCTAA ATCATTAGAG
AGAGATCCTC ACTTCGTCGT GGCGACACCA GGAAGACTTG CCGACCACTT AGCTCAGCAT
CATCTGCACC TTAATGGACT CGAACTATTA ATTTTAGATG AAGCCGACCG CATGCTTGAT
CTGGGCTTTG TCGATCAGTT AAAAGCAATT AATGCAGCCG CTGACCATAA GCGTCGCCAA
ACATTGATGT TTTCAGCAAC CTTAGATCAC AATAAGATCA ACGAGATTGC CGCCGAGCTG
TTAAAAGATC CTATGCATGT ATCTATTGGT GCGGGCAATA TTGAAAACCT GGATATCACT
CAAAGAATTT ACCTCAGTGA TCATCTGGAT CATAAAGAAG CATTGCTGAA CCACATTTTA
AAAAATGAGA AAAACAAACA GGTCATCATT TTTACTGCGA CTCGCCAAGA TACCGACAGG
TTAGCGACTA AGCTTGCTGA AGCCGGATTT AATACCGCAT CCCTCAGTGG CGACCTAAAG
CAAAATGCCC GTAACCAGAT CATGGATCAG TTCAGTAGAG GTTTACAGGA TATCTTGGTC
ACTACCGATG TGGCTTCACG TGGTCTGGAT CTGCTTAATG TCTCTTTGGT TATCAATTTC
GATATGCCAA AATTTGCCGA AGAATATGTT CATCGTATCG GCCGTACGGG TCGAGCCGGT
GCAAAGGGTG ATGCGATTTC TCTCGTCGGC CCTAAAGATT GGGTCAACTT CAAACAAGTA
CAAGTTTTCC TTCGCAAAAC ATTCGAGATA AGTACAATCG ATGGCTTAGA AGCTAAATTT
TCAGGGCTGA AAGACAAGCC TAAGGCAAAG AATAAGCCTA AGGCTAATGC GAAGAAATCG
ACGGCAACGG CTGCTAAGGG TAAAACTAAG GCTAAGGCTA AAGGAAGTAG AGACAAGCGC
TTTATCACAG GCATCGATGT TGGTGATGCC CCTATGCTTA GAAAGCCAAA ATCTAAGCTT
CAGGATACCC CTGAATAA
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| Protein sequence | MNHHELGYNG QSNQFWSTPL QFTDFSLDTR LLKTLDHMGI EKPTEIQQQA IPVGLSGKDL
MASSKTGSGK TLAFLLPAMQ RIISTRALSK RDPRVLILLP TRELANQVYS QLRLLVANTQ
YKAVKILGGE NFNDQAKSLE RDPHFVVATP GRLADHLAQH HLHLNGLELL ILDEADRMLD
LGFVDQLKAI NAAADHKRRQ TLMFSATLDH NKINEIAAEL LKDPMHVSIG AGNIENLDIT
QRIYLSDHLD HKEALLNHIL KNEKNKQVII FTATRQDTDR LATKLAEAGF NTASLSGDLK
QNARNQIMDQ FSRGLQDILV TTDVASRGLD LLNVSLVINF DMPKFAEEYV HRIGRTGRAG
AKGDAISLVG PKDWVNFKQV QVFLRKTFEI STIDGLEAKF SGLKDKPKAK NKPKANAKKS
TATAAKGKTK AKAKGSRDKR FITGIDVGDA PMLRKPKSKL QDTPE
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