| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1590 |
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| Symbol | |
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| ID | 5612024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1899859 |
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| End bp | 1901133 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932460 |
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| Product | peptidase M23B |
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| Protein accession | YP_001473329 |
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| Protein GI | 157374729 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0596835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCAGA TAAATACTCA GGTACTCTCA TTTTTACAAG AGTCGAGTAT CCATAAAAAA
GTATTATTAG GTGCGGGTCT GCTTATCGGT GCGGCCATAT TGTGGCCAAC TCATCAGCAA
GTGTTGCCTC AGCGTATTCC TATCGACTTA GATATCGATG CACTTGTCAG TCAGATAAGT
TCCACAGTAG CCACAGAGGC TGTGTCAGTT GTAAAACCAG ATTTTGACAA GAGTATTATC
AGCGGCGATA CCTTAAGTGG CCTTTTTGTT CAGGCCGGTG TCGATCAGCA AACCATGTAC
CGGGTCTTAG AGGCCGACTT AAACATTCTG GCACTCGATA CGCTTAAGCC GGGGAACGAG
ATAAAGTTCT GGTTGGATGA TAAGGGAGAG CTTGAGAAGC TCGAACTATA CTTTTCGGCT
GCTAGGCAGG TGGTCTTCAG CCGTTTCGAT GATGGCTCCT ACAATGTCGA TGAGATCAAT
ATCGAGGGCA TTTGGCAGAA TCGTGCCGTA GCGGGGGAGA TCCAGGGGTC ATTTTATCTC
TCGGCTAAGC GAATGGGGTT AGATTCAGGC GAGATCCAGC GAATAGAGTC TTTGCTGAAG
GAGAAATTAA ATTTTGCCCG GGATCTGAGG GCGGGTGACA GTTTCTCAGT GCTGATGAGC
GATCAATATA TCGATGGCTC AATGACGGGC GCAAGCGATA TTTTGGGGGT AAGCATTCAG
CGTGGCCGAA GTCATATTAA TGCCTACCAA AACAGTGATG GCAACTTCTA TGATGAAAAA
GGGCAGAGTC TAGCGCGGGC TTTTCAGCGT ATTCCCCTTC AAAGAAACTA TCGTATCAGC
TCGAGCTTTA ATCCTCATCG TCACCATCCG GTAACAGGGC GCACCTCTCC TCACAATGGT
ACCGACTTTG CCACACCAAT CGGCACTAAG GTTATCGCGC CGGGTGATGG TATCGTCTCT
TTGGTGACCG ACCATAGATT TGCGGGTAAG TATGTGGTGA TAGAGCACGG CAATAAATAC
CGTACACGTT ACCTGCACCT CTCGAAGGCA TTAGTGCATA AGGGGCAGAG GGTCTCACGT
GGTCAGGTTA TCGCCCTATC GGGCAATACC GGCCGCATTA CCGGGCCGCA CCTTCATTAT
GAGTTTCATG TGAATGGCAG GCCGGTCAAC CCGATGAAGG CGAATATCCC CATGGCGAGT
CAGCTGTCAC GTAAGCAGAT GAACTCTTTC GAGCAGTTGG TGCAGGTTCG TCAAATGATG
ATGGGCCAGA GTTAA
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| Protein sequence | MSQINTQVLS FLQESSIHKK VLLGAGLLIG AAILWPTHQQ VLPQRIPIDL DIDALVSQIS
STVATEAVSV VKPDFDKSII SGDTLSGLFV QAGVDQQTMY RVLEADLNIL ALDTLKPGNE
IKFWLDDKGE LEKLELYFSA ARQVVFSRFD DGSYNVDEIN IEGIWQNRAV AGEIQGSFYL
SAKRMGLDSG EIQRIESLLK EKLNFARDLR AGDSFSVLMS DQYIDGSMTG ASDILGVSIQ
RGRSHINAYQ NSDGNFYDEK GQSLARAFQR IPLQRNYRIS SSFNPHRHHP VTGRTSPHNG
TDFATPIGTK VIAPGDGIVS LVTDHRFAGK YVVIEHGNKY RTRYLHLSKA LVHKGQRVSR
GQVIALSGNT GRITGPHLHY EFHVNGRPVN PMKANIPMAS QLSRKQMNSF EQLVQVRQMM
MGQS
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