| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1589 |
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| Symbol | |
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| ID | 5612023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1896404 |
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| End bp | 1899460 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932459 |
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| Product | exonuclease SbcC, putative |
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| Protein accession | YP_001473328 |
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| Protein GI | 157374728 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACCAC TTTCACTCTC AATGTCGGCC TTTGGCCCCT TTGCTTCGAC CCAAGTCACC
GATTTTTCGG CGCTGGGCAG CAATCCGCTT TTTTTAATCA ACGGACCTAC AGGCGCGGGT
AAAACCACGA TCCTCGATGC CATCTGTTTT GCCCTTTATG GCAAGACGAC AGGCGATGAG
CGCGAAGGTA GCCAGATGCG CTGTGATTTA TCCGTCGATA CTCTGTTGAC TGAGGTCACC
TTTAGTTTTG CGCTGGGTGA AAAGCAATAC AGAATAAGAC GCGTACCCGA ACAGCAGCGA
GCCAAGAAAA GTGGCGATGG TTACACGGTA CAAAAGCCGG AGGCCCAGCT GTATCGAGTC
GATAGCGATG GCACCGAGCA TCTGCTCGTT GCCAGCAAGG TATCCGAGGC AACTGCCGAG
ATAGAGCAAT TGACCGGACT CGATGCCGAC CAATTTCGTC AGGTGATGGT ATTGCCTCAG
GGGAAATTTC GTGAACTCTT GATGGCGGAC TCGAAAGACA GAGAGAAGAT CTTCAGTCAG
CTATTTCAGA CTCAGATCTA TCGCAAAATT GAAGACAAAT TAAAACTGCA AGCGTCAAAG
ATACGCAATG ATGTGAGAGA CCATCGTAAT AAATGTGACG GCATGCTGCA CAGCGTCTCA
CTGGACTCAG ACGAGGCCTT AAATGCCGAA CTTGCCGAGG TGACGCCAAG GTTAACTCAA
GCCTCAGAGA GTAAAGATAA GGCGAAGCTT GCCCTGATCG ATGCCAATAA GCAGCTTGAA
TCTGCCAAGT TGCTCGTTAA TGACTTCGAT GCGCTAGATA AACTTCAGCA AACAGCAACA
CATTTAGCTG AGCAGAAAGA GGCGATAGCA GAGCGTCAGC TTCAGTTCGA AAACGGCCAA
AAGGCGCAGC AATTAAAACC TGTTTTAGAT ATGTCATTGG CTCGTGAGTC AGAAGTGGCT
CAGGCGCAAG CTGGTATTAC CCAAGCTCAG TTTTCCAAGC AACAGACTGA ACAGGCGTTA
ACCATTAGTC AGGCAAAATT CGACACCTTG GCCGAGCAGG AGCAGAAATT ACAAGATGTC
CAGAGTAATG AGCAATACTT AAATTCGCTA AAACCACAGC TTCTTGGGCT CGATGGACTG
GAAAAAGAGC TGCACACAGC AATGCTCTCG CTCAATCGGG CAAAAGATAA GGGCATTAAA
GCAAGCGCGA CCTTAAAGGG AATAGAGCTT GAGAGACAAA ACGCCGAGCT ACGCGTTCCC
CAGTTAGAAC AAGTGGCCAG TGAGCTGCTC AATGTCCAGC AAACACTCAC GGCGCAAGGC
GAGTTGATTG AGCGTTATCA GCAATGGCAA GTTGCCGGCA ATCAGGTTGC TAAAACTGAG
CAAGCGTTGA AACTTGCAGA GGAGAAAGGT AAGCAGTTTC GTCTGGAGGC TAAAGAGAAA
GGTGATGCTT ATGACCAGTT ACAATTAATC TGGCATCGTG GTCAAGCGAG TATATTGGCA
CAAAAGCTAA ACCCGGGTGA GCCTTGCCCC GTGTGTGGCA GCGCTGAGCA TCCAAACCCT
GCCCATAGTG AGCAGGTACT GCCGACAGAA GATGATTTAG AATCAAGCAA ACTGGTTTGT
GAAACTGCTA AAGGAGTTTT GAATCAAGTT ATAGCCGATT ATAAAGGGTT AAAAGCACAG
TTACAGGAGC AAGCGAAGCT CAGAGATGAA TATCAACAAC GACTCGGTGA GTGGGCTTCT
CATCCCCTTG AGTCGTTGCA GTCGCATCTT GAGCAAGTTC AGTTGCAAGT GAATCATGCG
AATGCTGCGG CTCAGGAGTT AACTCAGCTC AGGCTGCAGT TGCAAACTTG GCTGACCAAG
GAGAGGGAGC TACAACATCA ATTAGAAGCT GACCGAGAAT ATTTCCACAC TCTGCAGAAT
AATTCAGCAT CACTACAGGG CAAACGTGAT CAGGCATTAG CGGCAATACC CGATCAGTAT
CGTAGTTTAG ATGCGCTTAA TACCGCGATA AATCAAGCGC AGGTCTTGCT TAACGGTTTA
CAGCAAACGA TAGGTGAGAT CCGTCAGGCT CACACTCAAG CGCGTGAGCA AGATGCCGCT
CAAACAGAAG CATTGGCGGC GGCTCAGTCG AATTCAATCC GAGCAACGCA GAAAAGTGAT
GAGGCTCAAG TCGATCTCAA TGGGCAATTG GCCGCTTCTG GTTTCGAGAA TAAGCAGGCG
TTAACACAAG CGCTGTTATC GAGTGAAGCG TTAAAGCTGA TAGCCGATGA GATTGCCAAA
TATCGGCAGG ATTGCATCGC GAACCAGACG ACATTAGCTC AATTGGCAGA GAAGTTAGCC
GAGCAAGTTA AACCTCAACT AGCCGAATTT GAGGGGCGTG TAGCAAGTAC TCAGGCTGAG
CAACAAGAGG CTGAACATAG TTGGCAGGCA TTGCAGGGCC GAGTGACGCA ATTGACTCAG
ACTCAAAAGC AGTTACATGA GGCTGACAAT CAAGCCAAGA AGCTGGAAGA GGAGTATGCC
GTTATCGGCA CCTTAGCCGA TGTGGCCAAT GGCAATACCG GCAACAAGAT CAGCCTGCAG
CGCTTCGTGC TCAGTGTGCT ACTCGATGAT GTCTTGCTCG AGGCGAGTCA TCGCCTGCAG
GTGATGAGTA AGGGGCGTTA TCGTTTGCTG CGCAAAGAGG ACAGGGCCAA GGGTAATAAA
GCGTCAGGCC TGGAACTCGA GGTCGAAGAT GCCTATACCT CTAAGGTGCG TCCCGTCGCG
ACCCTCAGTG GTGGTGAAAG CTTTATGGCA GCCCTATCGA TGGCTCTTGG CTTATCGGAT
GTTGTACAGG CGTATGCGGG GGGCATTAAG CTCGATACCC TCTTTATCGA TGAAGGGTTT
GGCAGTTTGG ATCAAGATTC GCTGGACTTG GCTATTCGTA CCTTGATGGA TCTGCAATCC
ACCGGGCGCA TGATCGGGGT TATCTCCCAT GTCTCAGAGA TGAAAGAGCA GATAGGTACC
CGTGTCGATA TCATTAAGTC ATCAATGGGC AGCGAGACCC GGCTGGTCTT GCCGTGA
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| Protein sequence | MRPLSLSMSA FGPFASTQVT DFSALGSNPL FLINGPTGAG KTTILDAICF ALYGKTTGDE
REGSQMRCDL SVDTLLTEVT FSFALGEKQY RIRRVPEQQR AKKSGDGYTV QKPEAQLYRV
DSDGTEHLLV ASKVSEATAE IEQLTGLDAD QFRQVMVLPQ GKFRELLMAD SKDREKIFSQ
LFQTQIYRKI EDKLKLQASK IRNDVRDHRN KCDGMLHSVS LDSDEALNAE LAEVTPRLTQ
ASESKDKAKL ALIDANKQLE SAKLLVNDFD ALDKLQQTAT HLAEQKEAIA ERQLQFENGQ
KAQQLKPVLD MSLARESEVA QAQAGITQAQ FSKQQTEQAL TISQAKFDTL AEQEQKLQDV
QSNEQYLNSL KPQLLGLDGL EKELHTAMLS LNRAKDKGIK ASATLKGIEL ERQNAELRVP
QLEQVASELL NVQQTLTAQG ELIERYQQWQ VAGNQVAKTE QALKLAEEKG KQFRLEAKEK
GDAYDQLQLI WHRGQASILA QKLNPGEPCP VCGSAEHPNP AHSEQVLPTE DDLESSKLVC
ETAKGVLNQV IADYKGLKAQ LQEQAKLRDE YQQRLGEWAS HPLESLQSHL EQVQLQVNHA
NAAAQELTQL RLQLQTWLTK ERELQHQLEA DREYFHTLQN NSASLQGKRD QALAAIPDQY
RSLDALNTAI NQAQVLLNGL QQTIGEIRQA HTQAREQDAA QTEALAAAQS NSIRATQKSD
EAQVDLNGQL AASGFENKQA LTQALLSSEA LKLIADEIAK YRQDCIANQT TLAQLAEKLA
EQVKPQLAEF EGRVASTQAE QQEAEHSWQA LQGRVTQLTQ TQKQLHEADN QAKKLEEEYA
VIGTLADVAN GNTGNKISLQ RFVLSVLLDD VLLEASHRLQ VMSKGRYRLL RKEDRAKGNK
ASGLELEVED AYTSKVRPVA TLSGGESFMA ALSMALGLSD VVQAYAGGIK LDTLFIDEGF
GSLDQDSLDL AIRTLMDLQS TGRMIGVISH VSEMKEQIGT RVDIIKSSMG SETRLVLP
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