| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1588 |
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| Symbol | |
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| ID | 5612129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1895262 |
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| End bp | 1896407 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932458 |
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| Product | nuclease SbcCD, D subunit |
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| Protein accession | YP_001473327 |
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| Protein GI | 157374727 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA TCCACACTTC CGATTGGCAC ATTGGCCGCC AGCTGCATAA TCAAAGCTTA
ATCGATGACC AGCGTCATAT ATTGGTTCAA ATACTTGCGC TTGCCGAAGA GCATGAGGTC
GATGCCGTTA TTATTGCCGG TGATATCTAT GATCGCTCCA TTCCGCCGGC CAATGCAGTT
GCCCTGCTCG ATGATGTGGT CAATAGCCTG GTCAATGTGA TGAAGCTTCC TGTGATCATG
ATTGCGGGAA ACCACGATGG TCATGAACGC CTTGGTTTCG CTTCCCGGCA GATGTCTGAC
AGCGGTTTAC ATATTATCGG TCCACTGCAT AAAGAGCTGT CGCCCATAAC CCTTAAAGGA
AAGTCAGGCA GTGCGGTGTT TTATGGCTTG CCCTATGCCG ATCCCGCGAC GGTTCGCCAG
GTGTTTGACT GTGAAGCAGG TAGCCATGAG CAGGCCATGG GGGTATTGCT GGAACAGGTT
CATGAACATG ACAGTCAAGG TCTTCCAAAG GTCGTGATTG GTCACTGTTT TCTCGATGGT
GGTAGCGAGT CAGAGTCTGA GCGGCCATTG AGTATCGGTG GGGCTGATAA AATATCGCCA
ACACTGTTCA CCCCGTTTAA TTATACCGCT CTTGGTCATC TTCATGGTCC GCAGTACAAA
GGGGAGGAGC AGGTTAGATA TTCAGGCTCC ATCCTGAAGT ACTCATTCAG TGAGCAGCAC
CAGAAAAAGT CGGTCACTTT AGTCGATTTC GACAGCCAGG GTAAGGCGCA GATAGAGCTA
CTGCCTCTGA CTGCCAAACG TGATGTCCGT ATTGTCGAAG GTGAGTTATC TGCCTTGTTA
GAGGCTGGTA AGACAGATCC CAATTGTGAT GATTACCTGA TGGTTCGGCT TTTAGATAAG
CATGCAATCT TAGATGCCAT GGGCAAGTTA CGCTCGGTTT ACCCTAACGT GTTACATCTG
GAGCGAACCG GCTTGATGAC TGATAACGGC CAGCTGGAGA TCCGCCGGGA TCATATTAAG
AAGGGGGAGC TGGATATGTT TACCGAGTTC TTCTCTCAGG TATCTGGGGA TCCTATGAAT
GAAGCGCAGC AGCAAGCCAT GGTGCAGGCT ATCGATGAAC TGCATAAGGG AGAGCAAGTA
TCATGA
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| Protein sequence | MKFIHTSDWH IGRQLHNQSL IDDQRHILVQ ILALAEEHEV DAVIIAGDIY DRSIPPANAV
ALLDDVVNSL VNVMKLPVIM IAGNHDGHER LGFASRQMSD SGLHIIGPLH KELSPITLKG
KSGSAVFYGL PYADPATVRQ VFDCEAGSHE QAMGVLLEQV HEHDSQGLPK VVIGHCFLDG
GSESESERPL SIGGADKISP TLFTPFNYTA LGHLHGPQYK GEEQVRYSGS ILKYSFSEQH
QKKSVTLVDF DSQGKAQIEL LPLTAKRDVR IVEGELSALL EAGKTDPNCD DYLMVRLLDK
HAILDAMGKL RSVYPNVLHL ERTGLMTDNG QLEIRRDHIK KGELDMFTEF FSQVSGDPMN
EAQQQAMVQA IDELHKGEQV S
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