| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1575 |
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| Symbol | |
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| ID | 5610853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1880836 |
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| End bp | 1881456 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932445 |
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| Product | TonB family protein |
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| Protein accession | YP_001473314 |
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| Protein GI | 157374714 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00700508 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.018049 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGAGAG GAATAGTATC ATTCATTATT GGTGGTGCTG TGACTTTTGC TTTGTTTGTT
TTCATGGCGT TTTTGGTAGG TGGCGGTCCA ACCCGCCACG ATGCCTCGAC AGAATCACCT
GTCATTGAAA TTACCATGAA CAAAGATGAT GCATCAGCAC AGAAAAAACC AAGGGTCAAG
CCGAAGCCGC CTACGCCGCC GGAGCAGCCA CCTAAGCCGG ATGTGACTCC GCCTGACAGT
TCATCTGACA TCGACACAAA TATGTCATTT AACATGGGTG GTGTTGCGGC AGGGGGAGCC
AATACAGGCT TTAAACTGGG TAACATGATG ACACGCGACG GTGATGCTAC ACCTATCGTG
CGAATCGAGC CTCAGTACCC AATAGCTGCA GCACGTGATG GTAAAGAGGG TTGGGTACAA
CTTAGCTTTA CTATTAATGA GCTCGGTGGT GTAGAAAACG TCAAGATTAT TAAGGCTGAA
CCGAAGCGTT TGTTTAATAA AGAAGCAAAG CGTGCACTTA AAAAGTGGAA GTACAAGCCT
AAAATTGTTG ATGGTAAAGC ATTAAAGCAG CCAGGTATGA AGGTACAACT CGATTTCACC
TTAGATAAAG GAGGCAGATA A
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| Protein sequence | MLRGIVSFII GGAVTFALFV FMAFLVGGGP TRHDASTESP VIEITMNKDD ASAQKKPRVK
PKPPTPPEQP PKPDVTPPDS SSDIDTNMSF NMGGVAAGGA NTGFKLGNMM TRDGDATPIV
RIEPQYPIAA ARDGKEGWVQ LSFTINELGG VENVKIIKAE PKRLFNKEAK RALKKWKYKP
KIVDGKALKQ PGMKVQLDFT LDKGGR
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