| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1572 |
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| Symbol | |
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| ID | 5612376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1878537 |
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| End bp | 1879892 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932442 |
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| Product | MotA/TolQ/ExbB proton channel |
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| Protein accession | YP_001473311 |
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| Protein GI | 157374711 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0811] Biopolymer transport proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0356539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00010475 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAGT TAATTACTAC AGCAATCGTT GCTGCAACCC TGGCTTTATC TTCAGGTATT
GCTAGCGCAG CTGACGCACC TAAGTCTATT GACCAGCTTC TTAAGCAGGT TCAGACAGAC
CGCGCAAATG CTTCTAAGAC AAACAAGAAG CGTGAGCAAG AGTTTAAGAA TGAGCGTGGC
GATAAAGCGG CACTTCTTAA GCGTGAAAAG AATGCCCTTG CTGCCGAAAG ACAGCGCGGT
AAAGATCTAA ACCAAGCTTT CCTTGATAAC GAGCGTAAAA TCGGTCAGTT AGAGGAAGAC
TTAAAAACAG CTCAAGGTGA CTTGGGTGAA ATGTTTGGTG TTGTTAAAGG TGATGCGGGT
GATTTCGCTG GTAAGCTAGC GGGTTCCAAC ATCTCTGCAC AGTATCCTGG CCGTGATGTT
TTCATCGCCG ACCTTGGTGC TCGTAAGCAG TTACCAAAAA TTGATGAACT TGAGCGTTTT
TGGGAAGAAC AGCTGTTCGA AATGGCTGAA TCTGGCAAAG TGGTTAAGTT TGAAGGCGCG
GTTACCGATA TCGATGGTAG TGTTCGTAAC ACAACAATCA CTCGTGTTGG ACCATTCAAC
CTTTTAGCCG ATGGTCAGTA CGTTGTTTAT AACGCAGATC TAGGCTTGGT TCAGCAGCTT
TCACAGCAGC CTGATGGTTA TCAGGTCAAA ACTGTTGCAT CATTTGAAGG TACAACTTCC
GGTGCTGCTA AGCTTTACAT TGACCCGGTT AAAGGTGTGC TACTGAACAT CTTTACTCAG
AAGGCGACTA TCGAAGAGCG TATTGAAGCG GGTGGAACCA TCGGTTACAT CATTATCTGC
CTACTTATTC TCGGTGCTCT AATCTCTATC GAACGTCTAA TCACGCTTGG TGTCGTTGGC
GCTAAAGTTA ACGCTCAGCG TAAGAACCTA GAAAATCCAG GTAACAATGC GTTAGGTCGA
GTACTTAAGG CTTACCAGGA CAACAAAGAT GTTGATGTTG AAACGCTTGA GCTGAAACTT
GACGAAGCGA TTCTGAAAGA GACGCCGGCA CTTGAGACGC GTATCTCAAT CATCAAGGTT
CTGGCAGCTA TCGCACCTAT GATGGGTCTG CTTGGTACCG TAACTGGTAT GATTGCAACC
TTCCAGAGCA TTCAGTTGTT CGGTACGGGT GATCCTAAGC TTATGGCTGG TGGTATCTCT
ATGGCGCTTA TGACTACGGT TCAAGGTCTG GTTGCTGCAC TACCGCTTAT GCTTATGCAC
GCAGTTGTAA TTGCACGTAG CAAGTCAATC GTACAAGTTC TAGAAGAGCA AAGTGCGGGA
ATTGTTGCTT CACACGCTGA GAAGAGGAAA GCCTAA
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| Protein sequence | MKKLITTAIV AATLALSSGI ASAADAPKSI DQLLKQVQTD RANASKTNKK REQEFKNERG
DKAALLKREK NALAAERQRG KDLNQAFLDN ERKIGQLEED LKTAQGDLGE MFGVVKGDAG
DFAGKLAGSN ISAQYPGRDV FIADLGARKQ LPKIDELERF WEEQLFEMAE SGKVVKFEGA
VTDIDGSVRN TTITRVGPFN LLADGQYVVY NADLGLVQQL SQQPDGYQVK TVASFEGTTS
GAAKLYIDPV KGVLLNIFTQ KATIEERIEA GGTIGYIIIC LLILGALISI ERLITLGVVG
AKVNAQRKNL ENPGNNALGR VLKAYQDNKD VDVETLELKL DEAILKETPA LETRISIIKV
LAAIAPMMGL LGTVTGMIAT FQSIQLFGTG DPKLMAGGIS MALMTTVQGL VAALPLMLMH
AVVIARSKSI VQVLEEQSAG IVASHAEKRK A
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