| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1569 |
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| Symbol | |
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| ID | 5612556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1873498 |
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| End bp | 1876107 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932439 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001473308 |
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| Protein GI | 157374708 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000550471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000582733 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTATAAGA ACAGCTTACT AGCTAATTCA GTGCGTTTTG CACTAATTGG TGGCGCTGCA
GCAACAGCTT TTGCAGTTCC TACAGTATTT GCGGCTGATG AAGCATCAGC AGATAAAGTA
GAGCGAATTG AGGTAACTGG TTCACGTATT AAGCGTAGTG ACCTTGAAGG TGCATCTCCT
GTAACAACCA TTACAGCTGA AGATATGAAG GTTGAAGGTA ACTTTACCGT AGCCGATGCG
CTACGTAACA GTAACCTTAA CTCTTTCGGT TCTTTCTCTG AGCGCTCAGG TAGTTCTGCT
CAGTCTCAAG CAACGATTAA CCTACGTGGT GCCGGTTCAG ATCGTACTCT GGTATTGATC
GATGGTAAGC GTTTCCCTGG TTCACCAACT CTTGGTGGTT CTGCGGCAAA CCTTAACGCT
ATCCCAATGG CGGCCGTTGA GCGTATCGAA ATCCTAACCG ATGGTGCTTC ATCTACTTAC
GGTTCTGATG CGATTGCTGG TGTTGTAAAC ATCATCATGA AGAAGAACTT CCAGGGTCTT
GAGTTTAGCG TTGGTGCTGG TAGTCGTGAC CGAGATGATG GCATGACGAG TAAAGAATTT
TCAGTTATTG CCGGTTATGA GATGGACAAG GGTAATATTA CCTTTGCATG GGACCATCAG
GACCGTGAAG GCATTGCTGA TGCCGATCGT GAGTTTACTG CACCTTGGAC TAATGATTTC
GATGGTAACG GTATTATCGA TGCCTACACC GAGACAGATG GCTGGAGTTA TTACGGTGCG
AACGTAAGAC ATCCGGATGG AACATTCCAG CCTTCAACAA ATTGTGATGC GCTTATCGCA
CAATATGGTG AAGATACATT TAGAAAGATG TCTGGTGAAC AGCAGTTCGG CCCAGGATCA
GATCTATGTA TGTATGCTTA CGGTAACGTG TCTTATAACA AGGCATCGAT TGACCGTAAC
ACAGTTTATG TCGATGCAAA TTATGAAGTA GCTGAAGATG TTGAGTGGTT TGGCCGTGTC
ATGTTCACCC AGAACACATC ATTTGGTCGT TATGCTCCAC CAGCAGCAAA GTGGAATAAC
ATGGCAGCAG ATCATCCTGA AAACCCATGG GATGTTGAAG CAACAGGTTA CTACCGTTGG
GTTGGTATCG GTACTCGTGA TGGTACAGTT GATGATTACA ACCAGGATTA CCTAACGGGT
CTTCGTGGTA CTGTCAGCGC ATGGAACGAT GCTGAGTGGG AGTTCTACTA CCACTACAAC
AAGGCCGATA ACAAGTCTAT GGGTGAGTAC TACCTAAGTT ACTCTGGCCT TGCTTATAAC
GAAGCAAACG GAATAGATTT AGGTTCTGAA GCTGGCATCA ATAACATGAA GGCGACGACG
CTGACTCAGG GAACCGCAGA GTTCCACCAG TACAACGCTG GTATTGGTTT CGATGCTTTC
GAACTGCCAG GCGGTCAAGC GGCTCATTAC TTCGGTATGG AATACTTCGA GCAAGATTTT
TCTGAAGTTT ATGATGCACA ATCTGAAGCG GGTCTGATTG GTGGTAGTGC TGGTAACTCA
GCAGGCGGTG ACCGTCAGGT TTGGGCTGCA TTCTATGAAG TTGCACTACC TGTTATAGAC
AGCGTAGAAG TTAACTTAGC AGTTCGTTAC GATGATTATA GCGACTTTGG TGGCAATACA
GCACCTAAAG CATCTGTTCG CTGGCAGGCA CTTGATAATA TCGTAGTACG TGCATCTTAC
TCAGAAGCAT TCCGTGCACC GGCACTGGAT CAGCTGTATG CGGCAACAAC CTTCAGTGCT
GAAGATGGTA CCGATTACCC TGGCTGTACA TCTAATGGAG TAGCTGAAGC TGATTGTAAA
GAGCAGCAGT ATGACACTTG GATCAGTGCA AACGGAGACC TAGGTCCTGA AACGTCTGAG
TACATCAACT TAGGTGTTGC GTGGGATATC GTTGATAACT TCGGTATTAA AGTCGATTAC
TTCAACCTGA ATATCGATAA TGTGATCAGT CAGCGTAGTA TTACTAACGT GATGGAAGGT
ATTGCGGATG GCACTCTAGC GACTACTGAA ACTTTCTATG TTGACCGTGC ACCGGGTACT
GGTGGAGGTC TTGGTCCGGT TCTTGAGGTT GGTACCGGTT ACGGTAACAC AGATAAGTTA
GAGATTAGTG GTGTCGATGT TGGCTTGAAT GCAAACTTTG AAACAGAGGT CGGTGACTTC
GCTATAAACT GGAACAACAG CTTCGTTCTG GAATACATTG AAGAAGTTAC AGGTGGTCAA
GCAGCAGAAG ATACTGCTGG CTGGGCTGGT CAGCCAGACT ATAAGTCAGT ATTTACTACG
ACTTACTCAA TGGGTGACCA CAGACTATCT TGGAACATGA ACTACACCTC TTCAACTTAT
GAGACTAAGG ATGAAGGCGA GTTGGATTCA TGGTTAATCC ACAACATCAG CTACACTTAT
GATGTTGGTG CCTACGGCGC AATCATGTTT GCTGTTAACA ACCTGACAGA TGAAGATCCA
GTATTGACTT CAGACGGTAA GTTTGAAGAT ACAGACCTTT ATAACAACTA TGGTCGTGAG
TACACTGCAC GTTATACACT TAAATTCTAA
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| Protein sequence | MYKNSLLANS VRFALIGGAA ATAFAVPTVF AADEASADKV ERIEVTGSRI KRSDLEGASP
VTTITAEDMK VEGNFTVADA LRNSNLNSFG SFSERSGSSA QSQATINLRG AGSDRTLVLI
DGKRFPGSPT LGGSAANLNA IPMAAVERIE ILTDGASSTY GSDAIAGVVN IIMKKNFQGL
EFSVGAGSRD RDDGMTSKEF SVIAGYEMDK GNITFAWDHQ DREGIADADR EFTAPWTNDF
DGNGIIDAYT ETDGWSYYGA NVRHPDGTFQ PSTNCDALIA QYGEDTFRKM SGEQQFGPGS
DLCMYAYGNV SYNKASIDRN TVYVDANYEV AEDVEWFGRV MFTQNTSFGR YAPPAAKWNN
MAADHPENPW DVEATGYYRW VGIGTRDGTV DDYNQDYLTG LRGTVSAWND AEWEFYYHYN
KADNKSMGEY YLSYSGLAYN EANGIDLGSE AGINNMKATT LTQGTAEFHQ YNAGIGFDAF
ELPGGQAAHY FGMEYFEQDF SEVYDAQSEA GLIGGSAGNS AGGDRQVWAA FYEVALPVID
SVEVNLAVRY DDYSDFGGNT APKASVRWQA LDNIVVRASY SEAFRAPALD QLYAATTFSA
EDGTDYPGCT SNGVAEADCK EQQYDTWISA NGDLGPETSE YINLGVAWDI VDNFGIKVDY
FNLNIDNVIS QRSITNVMEG IADGTLATTE TFYVDRAPGT GGGLGPVLEV GTGYGNTDKL
EISGVDVGLN ANFETEVGDF AINWNNSFVL EYIEEVTGGQ AAEDTAGWAG QPDYKSVFTT
TYSMGDHRLS WNMNYTSSTY ETKDEGELDS WLIHNISYTY DVGAYGAIMF AVNNLTDEDP
VLTSDGKFED TDLYNNYGRE YTARYTLKF
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