| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1567 |
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| Symbol | |
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| ID | 5612554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1868850 |
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| End bp | 1871231 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932437 |
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| Product | DNA polymerase II |
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| Protein accession | YP_001473306 |
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| Protein GI | 157374706 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000253112 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000162261 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTTTCAC GGCATGTTGT TCAAGATTCA GCTTCATTAT GGCTACATTA TTATGTGAAA
ACTGAAAATG GCCCTGTTTT GGTCAAAGTT CCCCAAGCAG AATTCATCTG TTTTTGTGCC
AGTGCTAACC TAGCAGCCTT GCTTTCAATC CCCGCACTCG GCGTGGTGAG AACCAAGGCG
TTACCCTTAC ATAACTTTGA TTTAGACAAT GTCACCGCTA TCTATTGTCA ATCAAGACAA
GGTTTCCGGC ATCTGATCAA AGGTGCTATT GACTTAGGGA TTGACCTTTT TGAAGCCGAT
ATCAGACCCG AGCAGCGTTA TCTTATTGAA CGTTTCATCG CTCTGGATGC CGAATTTATG
GGGCATTATG TCGAAGACAT CCCCTCCTCG GCCCTTCCGG TGTTCATCGC CCAGCGCGCC
AGGAAAAGAT CTTTCGATAT CGAATTAAAA TCAATATCTC TGGATTTTGA ATGTAGCTTC
AATGGAGAGC TATATTCGGT GGGACTTTAT GGACGTAATG AAAAAGGCGA TGAGTATCAA
AAAGTGATCA TGGTAGGCAA CCAGACAGAT CAGGGCTCAA ACAAGCAGCC AGATGGAGAG
TTTGCTCGAA TTGTCGATGA TATCCAGTGG GTGAGTGACG AAAAAACACT GATTATTGCG
TTGATAAATT GGTTTGCCGA CTATGATCCC GATGTGGTCA TTGGTTGGGC TGTTGTTACT
TTCGATCTGG CTCTGTTGTA CAGAAGAGCA AAACTCCACG GTATTGCCCT GACTATTGGT
CGTGGGAAAA GCGAGCTTGG ATGGAAAGTT GCAGATAAAT ATCGGCCTGA AACCCTGACC
TTACCAGGCA GGGTCGTGCT CGATGGTATT GATTGGCTCA AAGCTGCATT TTATCGATTC
GATAGTTTCT CTCTAGAGTT TGTCAGTCGA GCATTATTGG ATCGCGGTAA GGCAATTCAT
AATGTAGAGA ACAGAGGAGA GGAGATCACC GAGCTTTTTC ACCAGAATAA GTTGGCATTA
GCCCATTACA ATCTTAACGA TAGCCGTTTA GTTTGGGATA TTTTTGAGAA AACTCAACTG
TTTGACTTTG CCATTGAGCG CTCGAGGTTA ACAGGTCTGG AGTTAGGTCG GGTCGGTGGT
TCAGTTGCTG CATTTAATAA TCTCTATCTG CCATATCTTC ATAGAGCGGG TTACGTCGCT
CCCTCCGGGG CTGCAAGCCA GGGACTCGAG AGCCCTGGTG GGTATGTGAT GGACTCTATA
CCGGGTTTAT ATCGGGATAT AGTGGTTTTG GATTTCAAGA GTCTTTATCC CTCTATCATA
CGTACATTCT TGATCGATCC TAAAGGGTTA ATAGAAGGGC TATCATCACA GGAGTCCGAT
ACAGTGGACG GTTTTCTGGG GGCAAAGTTT AGTCGGCGCT CACCCATCTT ACCTCAACTG
ATAAAAACGT TAGCCGAGCA CAGGGAGGAA GCAAAGGCTG AAAACAATGC TCCGCTTTCT
CAGGCGATAA AAATTATCAT GAACTCCTTA TATGGTGTGC TGGGTTCGAA AGGTTGTGTA
TTTCATGATG CCCGCTTAGC AAGCTCTATA ACACTCAGAG GTCATGAGAT CATGAAGCAG
ACGCGTAAGT GGATTGAGGA GTTGGGCTAC CAGGTGATTT ATGGCGATAC CGACTCAACT
TTTGTCTGGT TAGGGGGGAA ATCTCCCCAA ACTGGTATCG GCGAAATTGG GAAGCAGCTG
GTGGACATAG TGAACCGGAG GTGGAAAGAG AAACTTAAAA ATGAGATGAA GCTCGACTGT
TATCTGGAGT TGGAATTTGA ATCTCATTTT GAACAGTTCT TTATGCCGAC ATTGAGGGGC
TCATCGGAAG GGTCAAAGAA ACGATACGTG GGAGCCTATA CTAAACCCGA TGGTGAACTT
GAACTGGTCT TTAAAGGCAT GGAGCAGGTG AGAAGTGATT GGAGTCCATT AGCCAGAAGG
GTACAGCAAG AACTGTATTT TCGTCTTTTC TCTAAACTTG ATGTTGTCTC TTTCTTGCGT
GGTGTTATTG ATGACCTGAA GCTGGGTAAA TTGGATGATG AATTGATATT TACGAAAAGG
CTACGTAGAG ATATCAAAGA CTATACCGCT AAGTCATCAC CTCATGTAAA AGCGGCTCAG
AAGATGTGTC AACATACCTC TGATGAGCAA TATTCCAGAA AGGGTACCAA AGTCGAGTAT
CTCATCACGC TTAATGGGGC TGAGCCGGTT AAGTTTCAAA AGTCATCGAT AGATTACGAT
TACTACATAG ATAGACAACT TCAACCTATT TCTGATCCCG TTCTTACCAT ATTGAAAGTT
AAATTCGAAA GTATTGCTTC TAATCAGTTA TCGTTAATTT AA
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| Protein sequence | MLSRHVVQDS ASLWLHYYVK TENGPVLVKV PQAEFICFCA SANLAALLSI PALGVVRTKA
LPLHNFDLDN VTAIYCQSRQ GFRHLIKGAI DLGIDLFEAD IRPEQRYLIE RFIALDAEFM
GHYVEDIPSS ALPVFIAQRA RKRSFDIELK SISLDFECSF NGELYSVGLY GRNEKGDEYQ
KVIMVGNQTD QGSNKQPDGE FARIVDDIQW VSDEKTLIIA LINWFADYDP DVVIGWAVVT
FDLALLYRRA KLHGIALTIG RGKSELGWKV ADKYRPETLT LPGRVVLDGI DWLKAAFYRF
DSFSLEFVSR ALLDRGKAIH NVENRGEEIT ELFHQNKLAL AHYNLNDSRL VWDIFEKTQL
FDFAIERSRL TGLELGRVGG SVAAFNNLYL PYLHRAGYVA PSGAASQGLE SPGGYVMDSI
PGLYRDIVVL DFKSLYPSII RTFLIDPKGL IEGLSSQESD TVDGFLGAKF SRRSPILPQL
IKTLAEHREE AKAENNAPLS QAIKIIMNSL YGVLGSKGCV FHDARLASSI TLRGHEIMKQ
TRKWIEELGY QVIYGDTDST FVWLGGKSPQ TGIGEIGKQL VDIVNRRWKE KLKNEMKLDC
YLELEFESHF EQFFMPTLRG SSEGSKKRYV GAYTKPDGEL ELVFKGMEQV RSDWSPLARR
VQQELYFRLF SKLDVVSFLR GVIDDLKLGK LDDELIFTKR LRRDIKDYTA KSSPHVKAAQ
KMCQHTSDEQ YSRKGTKVEY LITLNGAEPV KFQKSSIDYD YYIDRQLQPI SDPVLTILKV
KFESIASNQL SLI
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