| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1566 |
|---|
| Symbol | dinG |
|---|
| ID | 5612863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1866578 |
|---|
| End bp | 1868656 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932436 |
|---|
| Product | ATP-dependent DNA helicase DinG |
|---|
| Protein accession | YP_001473305 |
|---|
| Protein GI | 157374705 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000620367 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATGT TATCTGCTGA CGTAAAAACT CAAATTCGTA CCATATATAA AGGTATTGCT
TCGGCGTTAC CTGACTTCCG CTCCAGGCGG GAACAAAACT ATATCGTCGC AGAGATATCT
AAAACCCTGG CGGGTGAATA CGATAAACAT AGACGCATCA TAGTCGTTGA AGCTGGAACC
GGGATCGGAA AGTCTCTGGC TTATATATTA GGCTCGATTC CGCTTGCGTT AGCCAGTAAG
AAGAAAGTCT GTATTGCCAC GGCAACCGTC GCCCTTCAGG AGCAGCTTTT ACACAAAGAT
CTGCCCTTCT TTCTCGCGCA ATCTGAATTA GATTTTACGT TCGGTCTGGT AAAAGGACGG
CAGAGATACG TCTGTCTGTC TAAACTCGAG ATGCTCATCG GCGCCGACAA CGGCACCCAA
ATGGCGATGT GGCAAACAAA GCCTGACAAT AGTCAGGTAA AGCAACTGCA AGCCCTGTTA
AAAGACTATC ATGAAGGGAA ATGGAACGGT GAACGCGATA CCTTGACCTC GCAACTGCCC
GACTATTTAT GGCAGCAGAT TGCCTGCGAC AAACACAGTT GTCATCGCCA ATTGGCCAGT
CATCGAAATT GCCCATTTCA CAAAGCCAGA GAAGATATCG ACAACTGGGA TGTACTGATA
GCTAACCACA GTCTGCTTTT TGCCGACCTG GAATTAGGTG GTGGCGTCAT TCTTCCCGAT
CCCGAAGAGC TCTACTACAT TATCGACGAA GCCCACCACC TGCCTATGGT GGCTCGAGAC
TTCTCCAGTG CCCAGTCTAC ATTAAGGGGC GCCATAGATT GGTTAGATAA AATAGATAAA
ACCAGTAGCA AGTTACAAAA TCAAATAAAG AGTAACCATA TCATCGCCCC AGCTCAGGCG
ATGCAAGATC ATGTAACCGA TCTAACAGGC TTATTAAATC AGATAGCCCA CTACTGCGAC
TCTCAAACTA AGCGCTTCGA TAACCCTGAA AATCGTATCC GGTTCGAACA TGGTAAATTG
CCCGAAGCCC TAATGATACA AGCTGAAAAC TTAGCCACCG TTTCGACAAC GGCACTGAAA
CAGTTTAATA AGATGTTGGT ATTACTCAGT GAAGCGATTA AAGATGGTGA TATCCCTAAA
CATCAATCTG AGCAACTGCT AACTGAAACC GGCTTCATGT TGCAAAGATT AGAAAACCTA
CAGAAACTGT GGAAAATGAT GGCGAAGGAG GATAATCCCA AGGGTGCCCC TATGGCACGT
TGGATTGAAC TCATCACAGG AAAACAAACT GATTACCTGT TTAACGCCTC TCCAATCGAA
GTCGGTTTTA TGCTGGAGAA ATTACTCTGG GATAAAGCGG CTGGGGTTGT ACTTTGCAGT
GCAACATTAC GGGCGTTGAA TAACTTCAAC CATTTCACCC GCCAGGTAGG GCTCTCTATC
GATGATGGCA GCCGTTATCT GGCCTTAGAT TCTCCATTCG ATTTCGAGCA AAATGCCACC
CTCTTCTTGC CTCAAATGAA AACTGAGCCT ACCGATGACA GTTATACTGA AGAGCTTGCT
GAACAGATCC TGGCATTAAT TGAAGGTGAA CAAGCGACCT TAGTGCTATT CGCTTCCTAT
TGGCAGATGG AAAAAGTGGC AGATCTCGTT GAAAACAAAA TTAAGACAGG ATTACAGTTA
CAAGGTACAG CATCGAGACA AGAGATATTA ACCAATCACA AGAAGCGTTG TGATGAAAAC
GAGCCGAGTA TTATTTTTGG GACCGGGAGC TTCTCAGAAG GACTCGATCT TCCGGGTGAA
TATCTGACGA ATCTGATCAT CACCAAGCTT CCTTTCGCTG TGCCCACCTC TCCCGTAGAG
CAGGCCCATG CCGAATACAT TAAAATTAAA GGCGGTAATC CCTTCCTACA GCTGACGATT
CCGGATGCAT CACGTAAACT GATACAAAGT TGTGGTAGAT TACTCCGTAA AGAGCAAGAC
TATGGCCGCA TCACGATTTT GGACAGACGT CTTGTCAGTA AACGCTATGG AAAATCATTA
CTGGATGCTC TACCTCCCTT TCGCCGCGTA ATTGAATAG
|
|---|
| Protein sequence | MRMLSADVKT QIRTIYKGIA SALPDFRSRR EQNYIVAEIS KTLAGEYDKH RRIIVVEAGT
GIGKSLAYIL GSIPLALASK KKVCIATATV ALQEQLLHKD LPFFLAQSEL DFTFGLVKGR
QRYVCLSKLE MLIGADNGTQ MAMWQTKPDN SQVKQLQALL KDYHEGKWNG ERDTLTSQLP
DYLWQQIACD KHSCHRQLAS HRNCPFHKAR EDIDNWDVLI ANHSLLFADL ELGGGVILPD
PEELYYIIDE AHHLPMVARD FSSAQSTLRG AIDWLDKIDK TSSKLQNQIK SNHIIAPAQA
MQDHVTDLTG LLNQIAHYCD SQTKRFDNPE NRIRFEHGKL PEALMIQAEN LATVSTTALK
QFNKMLVLLS EAIKDGDIPK HQSEQLLTET GFMLQRLENL QKLWKMMAKE DNPKGAPMAR
WIELITGKQT DYLFNASPIE VGFMLEKLLW DKAAGVVLCS ATLRALNNFN HFTRQVGLSI
DDGSRYLALD SPFDFEQNAT LFLPQMKTEP TDDSYTEELA EQILALIEGE QATLVLFASY
WQMEKVADLV ENKIKTGLQL QGTASRQEIL TNHKKRCDEN EPSIIFGTGS FSEGLDLPGE
YLTNLIITKL PFAVPTSPVE QAHAEYIKIK GGNPFLQLTI PDASRKLIQS CGRLLRKEQD
YGRITILDRR LVSKRYGKSL LDALPPFRRV IE
|
|---|
| |