| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1563 |
|---|
| Symbol | |
|---|
| ID | 5612860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1864388 |
|---|
| End bp | 1865080 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932433 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473302 |
|---|
| Protein GI | 157374702 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3110] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.481041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000891871 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAC TCAAGCCAAT CACCGCAGTC ATCGCTCTGC TTGGTTCCTC ATCGGTTCTG
GCTGCCAACT TGCATATTCC AATGGCGTTC GAATACCTTG CCATCGATGG GAAGAAAATA
GAGACCAGCC TATTCAATCA TAAGGCCGAT CTCGAACTGA CCAATGGTTC TCATAAAATT
GCAATTCGTT ACCATGACAT GGTTGAGGAT GATTTTAGTG ACGGTGAGAG CTTTGTTAAG
TCATCACCAT TTATCATCGC TATTGACGTT GATGGCGATC ATGAATACCG ACTAAAACCT
GCCGATGGCG ATTTTGTAAA AAAACCAAAA ACTTTTGCAA AATCTCCCCA GGTCGTGATC
ACACGAAGCG ATAAGGGTCA GGTGAGCTAT AGAGTCGATC AGACCGAATT TACTGAAGAT
TCATTTGTAA ATACTCTCTT CGGTGGCGGA AATGGCCAGG ATGTTGCCAG TGTCGCCACT
GCTGCAACAG GTGGTGCCGT TATCGCATCC ACGACACCTA CTGCACCAGT CAGTAAACCT
GCACCTATCG ACGCCGGGAT AACCCCCACT CCTGTCTCAG GCGATAAAGC AAGCGATGCT
GCACACGCTC AACAAATGCT TCAATACTGG TGGTTACACG CAGATAAAGA AACCCGTAAA
GAGTTCATGA GCTGGGCGAT TAAACAACTG TAA
|
|---|
| Protein sequence | MKSLKPITAV IALLGSSSVL AANLHIPMAF EYLAIDGKKI ETSLFNHKAD LELTNGSHKI
AIRYHDMVED DFSDGESFVK SSPFIIAIDV DGDHEYRLKP ADGDFVKKPK TFAKSPQVVI
TRSDKGQVSY RVDQTEFTED SFVNTLFGGG NGQDVASVAT AATGGAVIAS TTPTAPVSKP
APIDAGITPT PVSGDKASDA AHAQQMLQYW WLHADKETRK EFMSWAIKQL
|
|---|
| |