Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1562 |
Symbol | |
ID | 5611724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1863728 |
End bp | 1863997 |
Gene Length | 270 bp |
Protein Length | 89 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640932432 |
Product | hypothetical protein |
Protein accession | YP_001473301 |
Protein GI | 157374701 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.492811 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000735026 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAACTAG AAATTCGAAA TTATTACGAA GTACTCTTAA TAGAACTATT ATCCGATGAA GGCTTGTTAG ATGAGTTACC CGCCGATTAT CTTGCTGATC TTTGCTGTGT CACACTCAAC CAGCTTCCGG TCAGGTACAT TCGCCACCTG GTCGATACCT ATTTCTTCGA AGATTACAAT GAACTCGCAG AAATGAAGTC AGAGATCCAA ACGGCATTGG AAAAGTCGCG GGCATTTCTA AAGGCTAACT TGAACAAAGA AAAAGAGTGA
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Protein sequence | MQLEIRNYYE VLLIELLSDE GLLDELPADY LADLCCVTLN QLPVRYIRHL VDTYFFEDYN ELAEMKSEIQ TALEKSRAFL KANLNKEKE
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