| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1558 |
|---|
| Symbol | |
|---|
| ID | 5612936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1858670 |
|---|
| End bp | 1859776 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932427 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473297 |
|---|
| Protein GI | 157374697 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3768] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR01620] conserved hypothetical protein, TIGR01620 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.947174 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000134961 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGCATG AAAGTGAAAA TGGTCTAAAA AAAAAGCAGG CGTTCGAGCC CGTTATCGAA
GCAGCATCTC CTACTCTGAA AGGCGCTCAG CATTACGATG AACAGCCGCT GGAATTCACC
ACAGAACCAC TAGCCGAGCA AGGTGATAGC ATAGAAGGCG ATATTGATGC CGCGTTCGAT
GCGACCTTCG ATGCCGAAAG TAAAAGGGGG AAGTCTCCCC GTCAACGACG TTGGTCAGTA
CTTGCTAAGC TCTCTTTGGT AGGTGTGCTT GGTCTGGTGG TGACTGAAAC CCTGTTAGGG
TTACAGAGCG CCTGGATTGA AAGCCCTTGG TTATTTGGGC TCTATGTCAC TGTCACTTCA
ATTATCTCTT TATGGGCCGG CACAATCACT GTGAGCGAGT GGCGTAAGTT AGCAAGACTC
AGATCGGTTG AAGAGGCGCA ACAAACCGGT GACCGACTGT CGCAAAGTAT GCAGGTTGGC
GAAGCGGATA AGTTTATCAA TAAGTTGCTC TCTCAATTGC CGAAAGATGT GGATTTGAGT
CGATACCTAT CCTCTATCAA TGATGAGCAT AATGATGCCG AGAAGCTTAT TTTATTCGAT
GAGCTGGTAT TGAGTGAAAG GGACCTTATT GCCAAAAAAT ATGTAAGAAG ATTTTCTCAA
GAGTCGGCGC TTCTTTTAGC TGCCAGCCCG TTAGCCTTGT TAGATATGGC GATCATTCTT
TGGCGTAACC AACGTATGAT ATATAAAATT GCAGAATGTT ATGGCATCGA GCTGGGTTAT
TGGAGCCGTA TCAAGTTAAT ACGGGGCATT ATTACCAACA TTGTTTATGC CGGTACCAGT
GAAATAATCA CAGATCTGGG GACACAACTA TTGTCTGTCG AAATGTCGGG CAAGCTCTCC
GCCAGATTAG GGCAAGGCCT TGGTGGTGGT TTGCTGACAG CCAGACTGGG TTATCAGGCT
ATGGCGCTGT GTAGGCCCAT CTCGTTTCAG GAGAAATCGC GTCCTAAGTT GTCTGGTATC
CATAAAGAAT TACTCCTGGA TCTTAAAGAT TTCTCTTCGG CGGTTTTAAC CAAAAGCGTA
TCTCGTAACA AAGATTTTAC ATCTTAA
|
|---|
| Protein sequence | MMHESENGLK KKQAFEPVIE AASPTLKGAQ HYDEQPLEFT TEPLAEQGDS IEGDIDAAFD
ATFDAESKRG KSPRQRRWSV LAKLSLVGVL GLVVTETLLG LQSAWIESPW LFGLYVTVTS
IISLWAGTIT VSEWRKLARL RSVEEAQQTG DRLSQSMQVG EADKFINKLL SQLPKDVDLS
RYLSSINDEH NDAEKLILFD ELVLSERDLI AKKYVRRFSQ ESALLLAASP LALLDMAIIL
WRNQRMIYKI AECYGIELGY WSRIKLIRGI ITNIVYAGTS EIITDLGTQL LSVEMSGKLS
ARLGQGLGGG LLTARLGYQA MALCRPISFQ EKSRPKLSGI HKELLLDLKD FSSAVLTKSV
SRNKDFTS
|
|---|
| |