| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1557 |
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| Symbol | |
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| ID | 5612935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1857125 |
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| End bp | 1858579 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932426 |
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| Product | protein of unknown function DUF463, YcjX family protein |
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| Protein accession | YP_001473296 |
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| Protein GI | 157374696 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3106] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000149306 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAGTA TAAACCGCTC TTTTTCTAAG TTAGGTAAAA AAGTTAGCCA AAAGACACAA
GCATTTGCGC ACCGAACTTC CGATAAACAT ATTCGATTAG CCGTGACCGG ACTCTCCGGG
GCCGGTAAAA CCGCTTTTAT TACGGGTTTA GTGAATCAAC TTCTCAACGC GGGTTTAATT
GGTAAGAGTA ATAACCTGCC TCTTTGGCAA GTGACCCGAG AGGAGCGCCT ATACGGAGTG
AAGCGGGACC TTCAACCAGA CTTAACCGTT GCCAGTTTCG ATTATGAGCA GGCGATGGCT
TCGCTCAAGC AGACCCCTTC TCAGTGGCCA GCTTCTACGC GGAGCATCAG TGAGCTGAGG
TTAGCTATCA GATACCAACC TCAAAAGGGA CTGTTAGCAA AGCTGACAGA TAGTGCGACA
CTCTATCTCG ACATTATCGA TTACCCGGGG GAATGGTTAC TCGACCTGCC CATGCTGAAG
CAGAGCTTTA GTCAGTGGTC TATGAGTCAG ACCAGGCGTG AGCATATCTT CAAGAAGTCC
GATTGTTACG GCCCTTTTAA TGAGGCCGTA TCTCAATTAG ACCTCTTTGG TGAGGCTGAT
GCCGCGCAAC TGAAACAGAT TGCCTCCCTC TATCAGCAAC TATTGCTCGA TTGCGTCAAT
GGGCATGGTT TTTATTATGC TCAACCAGGA CGACTACTAT TGCCCGGCGA GCTTGTAGAT
ACGCCCGTTT TAGCCCTGTT TCCTCTGCTG GGTTTATCTG CCAAAACCGT CACTCAGTTG
GATGCGGGCG CATCAAATAC AGCCTATCAA GTATTGAAGA CTCGATACAA ACAATATCAG
AGCAAAGTGA TCATGCCTTT TTATAGGGAG TACTTTGCAA AATTTGATCG ACAGTTACTC
TTGGTGGATT GTTTTACTCC GCTCAATAGT GGTAAAGATC AGTTTGATGA CATGACTCAA
GCCCTCAATG GAATAATGGA GAGCTTTAAA TTTGGTCAAT CAAATATCCT TAAGCGGTTA
TTTTCCCCAA GAATTGACAA GTTACTGTTC GCCGCGAGTA AGGTGGACCA TATCACACGA
GATCAGCAGG GTAATGTTCT TTCGCTATTG ACTCAACTCG TGAAACAGAG TCAGAAACAG
GCTAAATTTG AAGGCTGTGA GGTCGAAGTG ATGGCGATTA GCGCAATTAA AGCGACTAAA
CATGCCATGG TCAGATCGGG TAGTGCGGAA GTGGAGGTTG TACATGGCGT CGACCTGTCA
CAGCAAAAAA CGGTGACCGT CTTTCCCGGA GAGGTCCCAA AGATGCTTCC TCAAGCTTCA
TTTTGGGATA CGCAAGGCTT CGAGTTCACG CATTTTGCGC CGCCACAAGT CACAGCCTCA
ACACAAGGCG CCGACTTTGA GCACATACGA TTAGATCACC TGCTTCAATA CCTGCTCGGT
GATAAGCTCA ACTAA
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| Protein sequence | MGSINRSFSK LGKKVSQKTQ AFAHRTSDKH IRLAVTGLSG AGKTAFITGL VNQLLNAGLI
GKSNNLPLWQ VTREERLYGV KRDLQPDLTV ASFDYEQAMA SLKQTPSQWP ASTRSISELR
LAIRYQPQKG LLAKLTDSAT LYLDIIDYPG EWLLDLPMLK QSFSQWSMSQ TRREHIFKKS
DCYGPFNEAV SQLDLFGEAD AAQLKQIASL YQQLLLDCVN GHGFYYAQPG RLLLPGELVD
TPVLALFPLL GLSAKTVTQL DAGASNTAYQ VLKTRYKQYQ SKVIMPFYRE YFAKFDRQLL
LVDCFTPLNS GKDQFDDMTQ ALNGIMESFK FGQSNILKRL FSPRIDKLLF AASKVDHITR
DQQGNVLSLL TQLVKQSQKQ AKFEGCEVEV MAISAIKATK HAMVRSGSAE VEVVHGVDLS
QQKTVTVFPG EVPKMLPQAS FWDTQGFEFT HFAPPQVTAS TQGADFEHIR LDHLLQYLLG
DKLN
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