| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1556 |
|---|
| Symbol | |
|---|
| ID | 5612934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1856680 |
|---|
| End bp | 1857075 |
|---|
| Gene Length | 396 bp |
|---|
| Protein Length | 131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640932425 |
|---|
| Product | phage shock protein C, PspC |
|---|
| Protein accession | YP_001473295 |
|---|
| Protein GI | 157374695 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02978] phage shock protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000100923 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG CTAATGGGCG TACCTTATAC CGAATTCCTC AATCAGGTAA AATTGCTGGA
GTATGTGCAG GGATAGCCGA TTACTTTAAC TTTGAAACTT GGCTTGTCAG GGTCCTAGCG
GCATCAATTT TTCTTTTAGG TGGTTCGGGT ATTGTTTTAG TTATCTATGT TTTGTTATGG
ATGATATTGG ATATTAAGCC TGGAACTGCA AAAGATAAAA CAGCGCATAA AGATATCGAG
ATAAAGAAGA AAATTTGGCA AGCGGGTGAG CCTGCCAAGA TGGCACTCAG GGATGTGAAC
ACACAATTTA GAAGCTTAGA AATAAGGCTT CAAAAATTAG AACGCCATGT CACATCAGAT
AGCTTCGATC TTAAACAAGA GATCAATAAT CTTTAA
|
|---|
| Protein sequence | MSEANGRTLY RIPQSGKIAG VCAGIADYFN FETWLVRVLA ASIFLLGGSG IVLVIYVLLW
MILDIKPGTA KDKTAHKDIE IKKKIWQAGE PAKMALRDVN TQFRSLEIRL QKLERHVTSD
SFDLKQEINN L
|
|---|
| |