| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1554 |
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| Symbol | |
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| ID | 5612199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1855750 |
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| End bp | 1856433 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932423 |
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| Product | phage shock protein A, PspA |
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| Protein accession | YP_001473293 |
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| Protein GI | 157374693 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | [TIGR02977] phage shock protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000370882 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGAATTT TCTCTCGCTT CGCAGATATC ATTAATTCAA ACATCAGTGC ACTACTGGAT
AAAGCCGAAG ACCCAGAAAA AATGGTACGC TTGATAATTC AAGAGATGGA AGACACCTTA
GTTGAGGTTC GTTCAACATC GGCTAAAGTA TTAGCTGAGA AGAAAGAGCT ACTACGTCGT
ATCTCTAAAG TGCAGACTCA AGTTCAGGAT TGGCAGGATA AAGCGGAATT GGCTTTATCT
AAAGACCGCG AAGATCTTGC TAAAGCGGCT TTAATTGAGA AGCAGAAGGC CGCTGAACTC
GTCGCCACAT TAGAGCAAGA GTTAGTCATG GTTGAAGAGC AGATCGCTCG TCTAAAAGAG
GAAGTTAACC TTCTTCAAGA GAAGCTTGCC GACGCAAAGG CGCGTCAGAA GACGATTATT
ATGCGTAAGC AGACAGCTTC TTCTCGATTA GATGTTAAGC GTCAACTCGA TTCTAGCAAG
ATTGATAACG CGATGACTAA GTTTGAGCAA TATGAACGTC GTGTTGAGGG GCTGGAGTCA
CAGGTCGAAG CTTATGACCT GGGCAACAAA AAGAGTTTAA GTGATGAGTT TGCAGCGCTA
GAAGCTGAAG ATTCAGTGAC CGCTGAGCTT GAAGCGCTTA AGGCAAAAGT CAAAGGCAGT
AAGACTAAAA CTAAGTCTAA GTAA
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| Protein sequence | MGIFSRFADI INSNISALLD KAEDPEKMVR LIIQEMEDTL VEVRSTSAKV LAEKKELLRR
ISKVQTQVQD WQDKAELALS KDREDLAKAA LIEKQKAAEL VATLEQELVM VEEQIARLKE
EVNLLQEKLA DAKARQKTII MRKQTASSRL DVKRQLDSSK IDNAMTKFEQ YERRVEGLES
QVEAYDLGNK KSLSDEFAAL EAEDSVTAEL EALKAKVKGS KTKTKSK
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